LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy16g3666	ATGATGAAGCCATTGAAGAATATTGTGAAGGAGCTCAAGGAGATTGGAGAAAGCATTAGCAACATGTATAGAAACAACAACAACAACAAGCATAATGCTCATCATCATCATCATCATCATCATAGGCATGGAAAATCACACATTGCACCCGAATGTTCATCACCAATATCATCATTATCATCATCACCATCACAATCATCATTATTATCAGTAACAGTACCAGCATGCTCTTCAGCCATGGCAGCAAGAGATCAGAGCAGATGGGCTAACTTGCCACCTGAGTTGCTGTTAGACATAATCAAAAGGGTGGAAGGAAGTGAAACTTCATGGCCTTCTAGAAGAGTGGTTGTGGCATGTGCCTCAGTTTGCAGAACTTGGAGACAGATAACAAAGGATGTGGTTAAGACACCAGAACAGTGTGGTTGGATCACTTTCCCTATATCTCTCAAGCAGCCTGGTCCAAGAGACACTCCAATACAGTGTTTTATTAAGAGAGAAAGGGCCTCTTCAACATATTGTTTATACCTTGGTCTCAGCCCTGCTCCTTCTGGTGATATGAGCAAACTACTACTGGCTGCAAAGAAGATTAGAAGGGCAACATGTACCGAATTCTTCATATCATTGGTCGCGGACGATTTCTCGCGAGCTAGCACTACTTACATCGGAAAACTAAGGTCTAATTTTCTTGGCACCAAGTTCATGATCTTGGATGGTCAGCCTTCACTCGATCCTTCTTTGCTTCAATCGAATTGCAAATCGCAGCAAAGAGTACACCTGAAACAGGTTCTTCCAAGAGTTGCTGCTTCTTCTTCTTCTGCTAACTATAATGTAGCAACAGTCTCTTACGAACTCAATGTTCTGAGAACAAGAGGGCCGAGGCGAATGCGATGTGCAATGCATTCAATCCCTGTATCATCAATCCAAGAAGGAGGAACTGCTCCAACTCCTTTAAATTTCACCAATTTCTTGAATGATCATGAATGTACTACTCTGTCTCTCTCCAAAGCGAAGAAGCCAGTAACTGAAACCGGGTCAGCTAGTACTCTCAGTACTCCAGAATCAAGCCATTGTGCAAGAGAACTTGTTTTGAAAAACAAGGCTCCTAGATGGCATGAGCAACTTCAATGTTGGTGCTTGAATTTCAAGGGCAGAGTCACAGTTGCGTCTGTTAAGAACTTTCAGCTTGTAGCAGCTGTAGAGCCTTCTCAAAATGTTTCGACTGCGGAACAAGAGAAAGTGATACTACAATTTGGAAAGATTGGGAAGGACATATTCACCATGGATTACCGGTATCCCCTTTCGGCCTTTCAAGCCTTCGCAATCTGTTTAAGCAGCTTCGACACCAAACCGGCTTGCGAATGA	1362	0.4295	MMKPLKNIVKELKEIGESISNMYRNNNNNKHNAHHHHHHHHRHGKSHIAPECSSPISSLSSSPSQSSLLSVTVPACSSAMAARDQSRWANLPPELLLDIIKRVEGSETSWPSRRVVVACASVCRTWRQITKDVVKTPEQCGWITFPISLKQPGPRDTPIQCFIKRERASSTYCLYLGLSPAPSGDMSKLLLAAKKIRRATCTEFFISLVADDFSRASTTYIGKLRSNFLGTKFMILDGQPSLDPSLLQSNCKSQQRVHLKQVLPRVAASSSSANYNVATVSYELNVLRTRGPRRMRCAMHSIPVSSIQEGGTAPTPLNFTNFLNDHECTTLSLSKAKKPVTETGSASTLSTPESSHCARELVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVEPSQNVSTAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE*	454

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy16g3666	453	ProSitePatterns	Tub family signature 1.	381	394	IPR018066	-
	Ahy16g3666	453	MobiDBLite	consensus disorder prediction	22	59	-	-
	Ahy16g3666	453	Pfam	Tub family	149	448	IPR000007	-
	Ahy16g3666	453	Gene3D	Tubby Protein; Chain A	146	453	IPR025659	-
	Ahy16g3666	453	PANTHER	TUBBY-RELATED	4	453	-	-
	Ahy16g3666	453	ProSitePatterns	Tub family signature 2.	438	453	IPR018066	-
	Ahy16g3666	453	MobiDBLite	consensus disorder prediction	29	46	-	-
	Ahy16g3666	453	Pfam	F-box domain	88	135	IPR001810	GO:0005515
	Ahy16g3666	453	PRINTS	Tubby superfamily signature	410	429	IPR000007	-
	Ahy16g3666	453	PRINTS	Tubby superfamily signature	274	301	IPR000007	-
	Ahy16g3666	453	PRINTS	Tubby superfamily signature	363	380	IPR000007	-
	Ahy16g3666	453	PRINTS	Tubby superfamily signature	431	453	IPR000007	-
	Ahy16g3666	453	PRINTS	Tubby superfamily signature	381	397	IPR000007	-
	Ahy16g3666	453	PRINTS	Tubby superfamily signature	204	220	IPR000007	-
	Ahy16g3666	453	SUPERFAMILY	Tubby C-terminal domain-like	137	453	IPR025659	-
	Ahy16g3666	453	PANTHER	TUBBY-LIKE F-BOX PROTEIN	4	453	-	-
	Ahy16g3666	453	Gene3D	-	82	134	-	-
	Ahy16g3666	453	SUPERFAMILY	F-box domain	81	132	IPR036047	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy16g3666	Ahy-Chr16	154526863	154530070	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	TUB	Ahy16g3666		Tub	5.10E-103	CL0395

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ahy16g3666	16	154526863	154530070	Ahy16g3666	16	154526863	154530070	ECH
	Ahy16g3666	16	154526863	154530070	Ahy6g2913	6	115222858	115226065	hybridization