Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g3664 ATGAGTTGGAGAACTCTATTCTCCAGACACAAAAAACTCACTCCATTCTTACAATTTTCCCAAAATGCCCCTTTTCGCTCTTCAATATTCCATCCACTACCCTTTCCTCCCTCCACCGCCACCGCCACCTCCAGGAACTTTCACTCCTCCCGAGTCACCGCCCAACTCGGCGCCCAACTCGGTTCCCAGCTCAGAAACTCTCTCGTCCCTTCAGGCTCCATTGCCGACGAAGAAGACGCCGATGGAACCATGAACGAGTTCCTGTCCCGATTCGTGTGGATGATGCGGAAGAAGGTTCGGGAATCGTATCCTGATTCCGACAAGGGAACTGTCGACACCATGCTCCTCGTGATCGTCGAGCGCGTCGTTTCGGAGCTCGAGAAGGGAGGGTTCGATGGCGTCCTTGGGGCGGCGACGGCGACGTTTCGTCCCGGTGACAACGGCGATTTCAGCGAGGATTTGTGGAGGACCGTGTGGGAAGTGAGCAACAATGTGATCGAAGGAATGAATAAGGAGAGGAAGAAGGAGAAGATGAAAGGTTTCTTGCAGTGTGATGAGGTGAAGCAGATGTGCAGGTTTGCTGGCGAGGTTGGAATACGAGGGGACTTGCTTAGGGAGCTGAGGTTCAAGTGGGCACGTGAGAAGATGGAGGAGCATGAATTCTACGAGGGTTTGGAGTGCATGAGGAAAGAAGCCGAAGCTGAAGAACATGAAGAGGAGGAACAAGGGGGTACAGAACATGGGGATGCTGGTGTTGGTGTTGCTGAGGAAGGGGGTAAGGTTGTTGGACTTCCCAAGAGGAAGGGGAAGATAAGGTACAAGATTTATGGGCTCGATTTATCTGATCCAAAGTGGGCACGTGTGGCTGATAGGATCCATGAGGCAGGAGAGGTCATGTGGCCAAAGGAGGCAAAGCCAATAACTGGGAAATCCAAGATTGTTACCGAGAATATTCTGAAGTTAAAGGAGGAGGAGGGCAGTGATGAGTTGTTGAGGCTGTTAGCCGAGTGGGTGGAGCTCTTGCAACCCAGTAGGGTTGATTGGAAGAGCCTGCTTGACGGATTGAAACAGCAGAATCCACCCTTGTACTACAAGGTGGCGGAAATTGTATTGACTGAAGATTCTTTCCAAACAACTATATCTGACTACTGTAGGCTTATTGATGCCTATGCTAAAGAGAATCGGTTTGAAGATGTTGAGAGGATGGTAAAGAAGATGAACGAAAAAGGTATGGTACCAGATGCCTCAGCAGCAACCGAATTGCTCCACATGTACTGCAAGGCGGGAAATCTTGAGCGCGCAAAACAAGCATTTGAAATCTTGAAGGCCCAAGGCTTCCAGCCAAACGTAAAAGTCTACACCGCACTGATCATGGCCTATGTAAATTCCAACGATCCTGCAAAGGGTGAATATCTTCTTAGAGAGATGGATACAAAAGATGTTAAACCAACTAAGGAAATATACATGGCACTGCTGCGAGCATTTTCTAAACGCGGTGAAGTTACTGGAGCTGAACGGATTTCTACAATGATGCAGTTTGCAGGATTCCAGCAGACTAAGGAGACATGCACATTACTTGTTGAGGCACATGCAAATGCAGGTAACCCAGATGCGGCTAGAAGGAACTTTGATTACATGAAAAACTTGGGGCATAAGCCTGATGATAGGTGCACTGCTAGCATGATTGTGGCTTATGAGAAGAAAAACTTATTGGACAAAGCATTAGAACTTCTTTTGAAGCTCGAGAAGGATGGGTTTGTGCCTGGGGTTGCAACTTACTCTGTTCTGGTAGATTGGATGAGTAGGTTGCTGCTCGTTGATGAGGCCGAACATCTTTTAGGCAAAATTGCTCAGCAAGGCGAGGCTCCTCCGTTTAAGGTTCAAGTGAGTCTCTGTGATATGTATGCGAGGGCAGGAAATGAGAAAAAGGCCCTTCAAGCTCTTGGTGCTGTCGAAGCTAGGAAGGATGAATTGGAACATGCTGATTTCGAGAGAATAATCCAGAGCCTTCTTGCTGGCGGGTTTGAGCAGGATGCACGAAGAATGTGTGGCATCATGGAGGCGCAGGGTTTCGCTCTATCGGAATCCCTTCGGATGGCCCTTTTGAAACCTAGCCGCAAATTCCCAAAGTTTAGATAG 2139 0.4857 MSWRTLFSRHKKLTPFLQFSQNAPFRSSIFHPLPFPPSTATATSRNFHSSRVTAQLGAQLGSQLRNSLVPSGSIADEEDADGTMNEFLSRFVWMMRKKVRESYPDSDKGTVDTMLLVIVERVVSELEKGGFDGVLGAATATFRPGDNGDFSEDLWRTVWEVSNNVIEGMNKERKKEKMKGFLQCDEVKQMCRFAGEVGIRGDLLRELRFKWAREKMEEHEFYEGLECMRKEAEAEEHEEEEQGGTEHGDAGVGVAEEGGKVVGLPKRKGKIRYKIYGLDLSDPKWARVADRIHEAGEVMWPKEAKPITGKSKIVTENILKLKEEEGSDELLRLLAEWVELLQPSRVDWKSLLDGLKQQNPPLYYKVAEIVLTEDSFQTTISDYCRLIDAYAKENRFEDVERMVKKMNEKGMVPDASAATELLHMYCKAGNLERAKQAFEILKAQGFQPNVKVYTALIMAYVNSNDPAKGEYLLREMDTKDVKPTKEIYMALLRAFSKRGEVTGAERISTMMQFAGFQQTKETCTLLVEAHANAGNPDAARRNFDYMKNLGHKPDDRCTASMIVAYEKKNLLDKALELLLKLEKDGFVPGVATYSVLVDWMSRLLLVDEAEHLLGKIAQQGEAPPFKVQVSLCDMYARAGNEKKALQALGAVEARKDELEHADFERIIQSLLAGGFEQDARRMCGIMEAQGFALSESLRMALLKPSRKFPKFR* 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g3664 712 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 519 553 IPR002885 -
Ahy16g3664 712 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 414 448 IPR002885 -
Ahy16g3664 712 Coils Coil 222 242 - -
Ahy16g3664 712 Pfam Pentacotripeptide-repeat region of PRORP 431 537 IPR033443 -
Ahy16g3664 712 Pfam PPR repeat 560 586 IPR002885 -
Ahy16g3664 712 Pfam PPR repeat 383 410 IPR002885 -
Ahy16g3664 712 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 554 588 IPR002885 -
Ahy16g3664 712 TIGRFAM PPR: pentatricopeptide repeat domain 522 554 IPR002885 -
Ahy16g3664 712 TIGRFAM PPR: pentatricopeptide repeat domain 452 484 IPR002885 -
Ahy16g3664 712 TIGRFAM PPR: pentatricopeptide repeat domain 383 415 IPR002885 -
Ahy16g3664 712 TIGRFAM PPR: pentatricopeptide repeat domain 421 450 IPR002885 -
Ahy16g3664 712 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 449 483 IPR002885 -
Ahy16g3664 712 PANTHER OS07G0661900 PROTEIN 22 701 IPR044657 -
Ahy16g3664 712 Gene3D Tetratricopeptide repeat domain 509 704 IPR011990 GO:0005515
Ahy16g3664 712 Gene3D Tetratricopeptide repeat domain 316 508 IPR011990 GO:0005515
Ahy16g3664 712 MobiDBLite consensus disorder prediction 232 256 - -
Ahy16g3664 712 MobiDBLite consensus disorder prediction 232 246 - -
Ahy16g3664 712 PANTHER PROTEIN NUCLEAR FUSION DEFECTIVE 5, MITOCHONDRIAL 22 701 - -
Ahy16g3664 712 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 379 413 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g3664 Ahy-Chr16 154518785 154521842 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g3664 16 154518785 154521842 Ahy16g3664 16 154518785 154521842 ECH
Ahy16g3664 16 154518785 154521842 Ahy6g2911 6 115214780 115217837 hybridization