Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g3548 ATGTCTGGTGGTACGAAGGGCGAACACCACCAAACGGTTCCCCTATCGGTGTTGTTGAAGCGCGAATTGGCGAGCGAGAAGATCGAGAAGCCAGAGATTGTTTCAGGCCAAGCAGGGCAGAGCAAGAAAGGGGAGGATTTCACCCTCATCAAAACTGAATGCCAGAGGGTGGTGGGGGATGGGGTCTCCACATTTTCTGTTTTTGGGCTATTTGATGGACACAATGGAACTGCTGCTGCTATTTATTCTAAGGAGAATCTTCTAAATAATGTTTTAAGTGCGGTTCCTCCTGATCTTAACAGAGATGAGTGGGTAGCAGCATTGCCTAGGGCATTGGTTGCAGGCTTTGTAAAAACTGACAAAGATTTTCAGGACAAAGGACAAAAATCTGGAACCACTGTAACGTTTGTGATTATAGAAGGATGGGTTGTAACTGTTGCATCAGTTGGTGATTCACGTTGCGTGCTTGAATCTGGTGAAGGTGGGCTTTATTATTTGTCAGCAGATCATAGGCTAGAAACAAATGAAGAGGAGAGGGTGCGAATCACCTCTAGCGGGGGTGAGGTTGGTCGGCTAAACACCGGGGGAGGCACAGAGGTTGGGCCGTTAAGATGTTGGCCTGGTGGCTTGTGTCTTTCACGGTCAATTGGTGATATGGATATTGGCGAATTTATTGTCCCAGTGCCGTATGTAAAGCAAGTGAAGTTGTCCACCGCTGGAGGCAGGCTAGTTATCTGCAGTGATGGGGTCTGGGATTCTCTATCTGCAGAAGCAGTCTTAGATTCTTGTCGTGGCATGTCAGCGGAGACAGCAGCATCACATATTGTTAAAGAAGCTGTAGAAGCAAAAGGACTTAGAGATGATACAACCTGCATCGTTGTTGATATATTACCACATGAGAAGCCACCTGCTCCTGCACCACATAGAAAGAAGAAAGGAATAATGAAGTCCATGTTTCGTAAAAAGTCATCTGAGTCATCTTCTTATAACGAGAAAGACTACTTGGAGCCAGACGTGGTAGAGGAATTGTATGAAGAAGGATCTGCTATGCTTTCAGAGAGGTTAGATACAAAATATCCTCTCTGCAACATGTTCAAGTTGTTTATGTGTGCAGTGTGTCAAGTAGAGATAAAACCAGGGGAGGGTGTTTCAATATTTGAGGGTGCGCCCAACCCTCGTAAACTGCGTCCATGGGATGGACCTTTCCTCTGTACAAGTTGTCAAGATAAGAAAGAAGCCATGGAAGGAAAAAAAGCATCAGGTAGACATAGCAGTGGAAGTGATGATGATTAA 1293 0.454 MSGGTKGEHHQTVPLSVLLKRELASEKIEKPEIVSGQAGQSKKGEDFTLIKTECQRVVGDGVSTFSVFGLFDGHNGTAAAIYSKENLLNNVLSAVPPDLNRDEWVAALPRALVAGFVKTDKDFQDKGQKSGTTVTFVIIEGWVVTVASVGDSRCVLESGEGGLYYLSADHRLETNEEERVRITSSGGEVGRLNTGGGTEVGPLRCWPGGLCLSRSIGDMDIGEFIVPVPYVKQVKLSTAGGRLVICSDGVWDSLSAEAVLDSCRGMSAETAASHIVKEAVEAKGLRDDTTCIVVDILPHEKPPAPAPHRKKKGIMKSMFRKKSSESSSYNEKDYLEPDVVEELYEEGSAMLSERLDTKYPLCNMFKLFMCAVCQVEIKPGEGVSIFEGAPNPRKLRPWDGPFLCTSCQDKKEAMEGKKASGRHSSGSDDD* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g3548 430 Gene3D - 33 302 IPR036457 -
Ahy16g3548 430 CDD PP2Cc 34 296 IPR001932 -
Ahy16g3548 430 PANTHER CATALYTIC/PROTEIN PHOSPHATASE TYPE 2C 8 424 - -
Ahy16g3548 430 PANTHER ALPHABET, ISOFORM E-RELATED 8 424 - -
Ahy16g3548 430 Pfam Protein phosphatase 2C 57 281 IPR001932 -
Ahy16g3548 430 SMART PP2C_4 24 294 IPR001932 -
Ahy16g3548 430 SMART PP2C_SIG_2 49 296 IPR001932 -
Ahy16g3548 430 ProSiteProfiles PPM-type phosphatase domain profile. 30 296 IPR001932 -
Ahy16g3548 430 SUPERFAMILY PP2C-like 34 296 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g3548 Ahy-Chr16 153073653 153078826 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g3548 5 428 PP2C-type Phosphatase Gene Family AT1G47380 79.859 0.0 713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g3548 16 153073653 153078826 Ahy16g3548 16 153073653 153078826 ECH
Ahy16g3548 16 153073653 153078826 Ahy6g2795 6 113769648 113774821 hybridization
Ahy16g3548 16 153073653 153078826 Ahy17g2508 17 119537302 119541320 PCT
Ahy16g3548 16 153073653 153078826 Ahy8g0298 8 6259801 6263812 PCT
Ahy17g2508 17 119537302 119541320 Ahy16g3548 16 153073653 153078826 PCT
Ahy8g0298 8 6259801 6263812 Ahy16g3548 16 153073653 153078826 PCT