Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g3531 ATGGAAGAGTTATCAAAGAATGTTGTAGCTACAAATCATGAGGGTCTAAGTGGTAAAATAATTTTCAAAGATGGAAAATTGTTGGAACCAGCAACATTTAAGATTGTCAATGTTATTGGAAGAAGTTACAATGAGTTAGCATATTGGTCACCAGAATCCGGTTTCTCAGAGAACCTTGTCAACCAAATTAGTCCTTCTTCTGCTTCTGCTTCGACCTCTGGTAGAGTACTTTTAAGTAATGCGAATTGGCCGGGTGGATCGAAATCAGTGCCAAAAGGTTGGGTTTATAATAATGAAGGAAGGAGGAGTGTGAAGATTGGTGTCCCTGCTGGGGATCCATGTCCTCAGTTTGTGAATGTGAGTTATGATCAGAGGCTGAATCAAACACATATCACTGGTTTCTCAATACATGTCTTTGAAGCAGTTGTGAAGCATTTACCTTATCAGCTTCCTTATGATTTGGTGCCATTTTATGGATCCTATGATGACATAGTTGTGCAAGTGAACAATAAGGTTTTTGATGCTGCTGTTGGTGATATTCAAGTAATTGACCAAAGATATGCATATGCTGAATTCTCTAATCCATATATTCCATCCGGTATTGCCATGGTATCAAAAGTAAAGCCAGATAGATCAAAAGAAACATGGATGTTCATGGAAGCTTTCACAAAAGACATGTGGTTGTTAATGGCAGCAATGCACATGTTTATATCATTTGTTATATGGTTGATTGAACGTGAACATAATTCAGAGCTTAAAGGGTTTGGAACCATGCTATGGTTTTCTGTCACCACATTATTCTTTGTACATAGAGAACCTGTGAAAAGCAACTTGGCCAGAGCAGTGCTAGCACCATGGTTGTTTGCAATTCTGATAGTGACAACATGTTTCACAGCAAGCCTCTCATCAATGATGACAGTGTCTCAACTTGAACCATCTGTGCCTGATATACAAACACTGCTAAGGACCAATGCAATAGTGGGTTGCAATAAGAACACATTCTTGGTTCATTACTTGGTTAATGAACTGAAATTCAAGCCTGAGAATGTTAAGGGCTTTGAATCAATTAGTGATTTTCCAAGGGCTTTTGAGAAAAAAGAAATTGTAGCAGCTTTTACTATTGCACCTCATGCTGAAGTCTTTCTTGCTACACATTGTAAGGGATATATCAAAGCAGGACCTACCTTAAAGCTTGGTGGATTAGGCTTTGGTTTAGGCTGCGTACATTACAACCTTGGTTGCGGCCCTTTCCCGGACCCTGCGTTAAACGCGGGACGCTTGTGCACCGGGTTGCCCCTTTATCAGGGTTTCAGGCATTTCCCAAGGGTTCAGCCCTATCAATTGACATATCAAGAGCAACATTGA 1365 0.4 MEELSKNVVATNHEGLSGKIIFKDGKLLEPATFKIVNVIGRSYNELAYWSPESGFSENLVNQISPSSASASTSGRVLLSNANWPGGSKSVPKGWVYNNEGRRSVKIGVPAGDPCPQFVNVSYDQRLNQTHITGFSIHVFEAVVKHLPYQLPYDLVPFYGSYDDIVVQVNNKVFDAAVGDIQVIDQRYAYAEFSNPYIPSGIAMVSKVKPDRSKETWMFMEAFTKDMWLLMAAMHMFISFVIWLIEREHNSELKGFGTMLWFSVTTLFFVHREPVKSNLARAVLAPWLFAILIVTTCFTASLSSMMTVSQLEPSVPDIQTLLRTNAIVGCNKNTFLVHYLVNELKFKPENVKGFESISDFPRAFEKKEIVAAFTIAPHAEVFLATHCKGYIKAGPTLKLGGLGFGLGCVHYNLGCGPFPDPALNAGRLCTGLPLYQGFRHFPRVQPYQLTYQEQH* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g3531 454 Gene3D - 2 106 - -
Ahy16g3531 454 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 2 403 - -
Ahy16g3531 454 Pfam Bacterial extracellular solute-binding proteins, family 3 128 394 IPR001638 -
Ahy16g3531 454 Gene3D - 107 215 - -
Ahy16g3531 454 Gene3D - 216 349 - -
Ahy16g3531 454 Pfam Ligand-gated ion channel 224 332 IPR001320 GO:0015276|GO:0016020
Ahy16g3531 454 SMART GluR_14 103 406 IPR001320 GO:0015276|GO:0016020
Ahy16g3531 454 PANTHER GLUTAMATE RECEPTOR 2 403 - -
Ahy16g3531 454 SUPERFAMILY Periplasmic binding protein-like II 83 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g3531 Ahy-Chr16 152851576 152857247 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g3531 8 403 Ion Channels AT4G35290 34.466 1.56e-73 244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g3531 16 152851576 152857247 Ahy6g2778 6 113547571 113553242 hybridization