Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g3525 ATGGGAATCGTTTTGGACAGCAACTGCGAATCCATAGTGGTGTCGTTGGAGACACAGAAGGCGGTGCCGGCGCCCTTCCTCACCAAGACCTACGAGCTGGTGGACGACGCCGCCACCGATCACATTGTCTCGTGGGGAGAAGACGAAACCACCTTCGTTGTCTGGCGTCCTCCTGACTTCGCCCGCGACCTTCTTCCCAACTACTTCAAACATAATAATTTCTCCAGCTTCGTTCGCCAACTCAACACCTATGGTTTCAGAAAGATTGTACCTGATAGATGGGAATTTGCAAATGACTTCTTCAAGAAAGGGGAGAAGCATTTGTTGTGTGAGATTCATAGAAGAAAAACATCACACACTCATCCTCATCATCAACAACTACCATCATCCATCAACCATAACCAAAATCATTTTAACAACAATATTCATATTCTTCCCTCTACTACTACATTTTATCATCCTTTTCACCAACACAACAACCGAGTCAGCATCTCCCCTGACTCGGACGAGTTACCTACTTGGTGTGACTCGGACATTATTAGCAACACTACTACTACTACCACTACTACTGCTTCTTCATCAACGCTTACAGCACTCTCTCAAGACAACGAAAGATTAAGGAGAAGCAACAACATCTTAATGTCCGAACTAGCACACATGAAGAAGCTCTACAACGACATAATCTACTTCGTTCAGAATCATGTTAAGCCTGTCGCACCAAGCAACACTTACTCTTCTAGTTTCATTCTTCCACAACACCAACCTTCTTCTTCTTCAGCTACAACAACTAATTGCAACGCTTTCTCAATGTTGCATAAGCAAGTGCAACAACAACAACAACAACAACACCATGACTATTTGAATTCTCCAACAAACACATCGAGGAGTTCTATAACAATGATTGAAGACCAAAGTAGTAAGAGTTGCAAGACGAAGCTATTTGGGGTGTCTCTTCAATCCAATAAGAAAAGGGTGCACCCTGACTACGGATTTAGCCACGCTTTTGCGGAAACAAATAACAAGGCTCGTTTGGTGTTGGGAAATGATAATGATGATTATTTGGGATTGAATCTCATGCCTCCTTCTTAG 1089 0.4307 MGIVLDSNCESIVVSLETQKAVPAPFLTKTYELVDDAATDHIVSWGEDETTFVVWRPPDFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANDFFKKGEKHLLCEIHRRKTSHTHPHHQQLPSSINHNQNHFNNNIHILPSTTTFYHPFHQHNNRVSISPDSDELPTWCDSDIISNTTTTTTTTASSSTLTALSQDNERLRRSNNILMSELAHMKKLYNDIIYFVQNHVKPVAPSNTYSSSFILPQHQPSSSSATTTNCNAFSMLHKQVQQQQQQQHHDYLNSPTNTSRSSITMIEDQSSKSCKTKLFGVSLQSNKKRVHPDYGFSHAFAETNNKARLVLGNDNDDYLGLNLMPPS* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g3525 362 Pfam HSF-type DNA-binding 26 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ahy16g3525 362 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ahy16g3525 362 PRINTS Heat shock factor (HSF) domain signature 26 49 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ahy16g3525 362 PRINTS Heat shock factor (HSF) domain signature 77 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ahy16g3525 362 Coils Coil 196 216 - -
Ahy16g3525 362 ProSitePatterns HSF-type DNA-binding domain signature. 65 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ahy16g3525 362 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 15 360 IPR027725 -
Ahy16g3525 362 PANTHER BNAC06G00310D PROTEIN 15 360 - -
Ahy16g3525 362 SMART hsfneu3 22 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ahy16g3525 362 Gene3D - 18 117 IPR036388 -
Ahy16g3525 362 SUPERFAMILY "Winged helix" DNA-binding domain 23 115 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g3525 Ahy-Chr16 152791960 152793389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g3525 10 359 HSF AT1G46264 56.077 1.16e-114 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Ahy16g3525 HSF_DNA-bind 2.70E-31 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g3525 16 152791960 152793389 Ahy16g3525 16 152791960 152793389 ECH
Ahy16g3525 16 152791960 152793389 Ahy6g2772 6 113487955 113489384 hybridization
Ahy16g3525 16 152791960 152793389 Ahy17g2524 17 120033659 120035500 PCT
Ahy16g3525 16 152791960 152793389 Ahy8g0316 8 6531647 6533456 PCT
Ahy17g2524 17 120033659 120035500 Ahy16g3525 16 152791960 152793389 PCT
Ahy8g0316 8 6531647 6533456 Ahy16g3525 16 152791960 152793389 PCT