Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g3518 ATGGGTGGCTGCAATGGTGGAAGCTTCCCTTGTGACTCATCAGAAGACTTCTCAGCTTTGTTCAACCAACTCCTCTCTCCGCCACCACAGCCCAATTTGACCATAACAAACCGGGTTCTTGGCCCTTCTTCTTCTGCTGTTTCTTCATCTGCTTTCCGTTTCTCTTCTTCTTCTCTTCATGATGATGATGATGATGATGATGAAGATCATCCCTTTCTTGATCACAATCCCAGTAACAATAACAACAACAACAATAATAATAATAATAATTGTAATGACGATTATATCCCTGCACCTCTTCATGACTCTGATGATGCTAACAACAACACTAGGCCACATCATCATCATCCAATTGAGAAGAATGGTGAGACTTCTGAATTGCCATCAAGGCATGCCCCACCACCACGTACTTCTTCAAAGAGGAGCAGAGCTGCAGAATTTCATAATTTATCTGAAAAGAGAAGAAGGAGTAGGATTAATGAGAAGATGAAGGCTTTACAGAATTTAATTCCAAATTCTAACAAGACAGACAAAGCTTCAATGCTAGATGAGGCTATAGAATATTTAAAGCAGCTTCAGCTTCAAGTGCAGATGTTAATGATGAGAAATGGTTTGAGCTTACATCCAATGTCACTACCAGGAGGATTGAGACCTATGATCCTGCCACATACTGGTGTGGATTTTGATGAAGGTAACAGATTTCAGAACTCTATCAATGGTGGGGCTCCATCATCATATACAGCCGACGAAAGCTTGGTGGCGCGGCCGCCTTTTGGTTTTCACAGACCATGCAGCATCTCAAACCAATCTGCTGCTATGCCATCATTGACAAATCTAGCTACTTCAGATAACTCATCAAGCTTTCAATCCTCTATCAAGGATGCACACATGCCATAA 897 0.4158 MGGCNGGSFPCDSSEDFSALFNQLLSPPPQPNLTITNRVLGPSSSAVSSSAFRFSSSSLHDDDDDDDEDHPFLDHNPSNNNNNNNNNNNNCNDDYIPAPLHDSDDANNNTRPHHHHPIEKNGETSELPSRHAPPPRTSSKRSRAAEFHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLMMRNGLSLHPMSLPGGLRPMILPHTGVDFDEGNRFQNSINGGAPSSYTADESLVARPPFGFHRPCSISNQSAAMPSLTNLATSDNSSSFQSSIKDAHMP* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g3518 298 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 56 296 IPR031066 -
Ahy16g3518 298 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 140 203 IPR036638 GO:0046983
Ahy16g3518 298 MobiDBLite consensus disorder prediction 141 155 - -
Ahy16g3518 298 MobiDBLite consensus disorder prediction 22 155 - -
Ahy16g3518 298 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 143 192 IPR011598 GO:0046983
Ahy16g3518 298 MobiDBLite consensus disorder prediction 277 298 - -
Ahy16g3518 298 MobiDBLite consensus disorder prediction 106 126 - -
Ahy16g3518 298 MobiDBLite consensus disorder prediction 75 94 - -
Ahy16g3518 298 CDD bHLH_AtPIF_like 143 205 - -
Ahy16g3518 298 MobiDBLite consensus disorder prediction 22 56 - -
Ahy16g3518 298 PANTHER TRANSCRIPTION FACTOR SPATULA 56 296 - -
Ahy16g3518 298 Pfam Helix-loop-helix DNA-binding domain 147 193 IPR011598 GO:0046983
Ahy16g3518 298 SMART finulus 149 198 IPR011598 GO:0046983
Ahy16g3518 298 Gene3D - 138 202 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g3518 Ahy-Chr16 152731764 152735349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g3518 143 221 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 85.000 6.62e-38 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ahy16g3518 HLH 3.50E-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g3518 16 152731764 152735349 Ahy16g3518 16 152731764 152735349 ECH
Ahy16g3518 16 152731764 152735349 Ahy6g2765 6 113427759 113431344 hybridization