Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g3514 ATGGCGCAGATTCAGGTGCAGCACCAGAGCGCGGTTTCGGCTCCACCGCAGAACGGCGTCGCAGCCGCTCCTTCGCCGCCGCTGCCGGCGGGTGCTGCGAATGGGACGAACCAGTTTGTTACGACGTCGTTGTACGTCGGGGATCTGGACCCTGAGGTTGACGAGAGGCACCTCTACGATTTGTTCAACCAGGTCGGGCAAGTGGTTTCGGTTCGTGTCTGCAGTGATTTGACCACTCGCCGATCGCTCGGTTACGGTTACGTTAATTACAGTAACCCTCAGGATGCTGCACGAGCAATAGATGTACTGAATTTCACTCCACTGAACAACAAGCCCATTAGGATCATGTATTCTCATCGGGATCCTAGCATTCGCAAGAGTGGGACTGCAAACATTTTTATCAAGAATTTGGATAAGGCAATTGATCACAAAGCTTTACATGATACTTTTTCTTCTTTTGGACATATTCTTTCTTGCAAAATAGCGACTGATGCTTCTGGCCAGTCAAAAGGCTACGGTTTTGTTCAATTCGACACCGAGGAGTCTGCACAGAATGCAATCGATAAGTTAAATGGCATGCTGATCAATGATAAGCAGGTCTATGTGGGTCATTTCTTACGTAAGCAAGATAGAGATAATGCTTTGGGTAAGACGACATTCAATAATGTCTATGTGAAAAACCTGTCTGAGTCGGTGACAGATGATGACTTGAAGAAAATTTTTGGAGAGTATGGGACAATCACTAGTGCTGTAGTAATGAGAGATGCAGATGGTAAATCAAAGTGTTTTGGGTTTGTTAATTTTGAAAACCCAGAAGATGCTGCCAAAGCTGTTGAGTCACTCAATGGAAAGAAAATTGATGACAAGGAGTGGTATGTTGGAAAAGCCCAGAAAAAATCTGAGCGAGAGAATGAGCTGAGAAGACGGTTTGAGCAAACTGTTAAAGAATCTGTTGATAAATACCAAGGTGTGAACTTGTATCTCAAGAACTTGGATGATACCATCAATGATGAAAAGCTAAGAGAACTCTTCTCCGAGTTTGGTTCAATAACCTCTTGCAAGGTTATGCGCGATCCAAATGGAATCAGTAGAGGATCAGGATTTGTTTCATTTTCAACTCCTGAGGAAGCATCTCGAGCTCTTACGGAGATGAATGGTAAAATGATTGCTGGGAAGCCTCTGTACGTTGCCCTTGCTCAGAGAAAGGAAGAGAGAAGAGCTAGGTTACAGGCACAATTTTCACAAATGAGGCCTGTTGCGATGACACCTTCTGTTGCACCACGGATGCCACTTTATCCTCCTGGTGCTCCTGGTTTAGGGCAACAATTTTTGTACGGGCAAGGACCCCCAGCCATGATTCCCCCACAGGCTGGATTTGGCTACCAGCAGCAACTTGTTCCTGGGATGAGGCCCGGTGGTGCTCCAATGCCTAGCTTCTTTGTTCCAATGGTTCAGCAGGGTCAGCGCCCAGGTGGACGACGAGGAGCTGGTCCTGTGCAACAACCTCAGCAGACAGTGCCAATGATGCAGCAACAGTTGCTTCCAAGGGGACGCTATATGCGTTACCCTCCTGGGGGTCGCAATATGCAAGATGTTCCACTCCCAGGGGTTGCTGGAGGAATGTTGTCAGTCCCCTATGACATAGGTGGTCTTCCAATCCGCGATGGTGTAGGGCAGCCAGTTGGAATTCAGGCCTTGGCTACTGCTCTTGCAAATGCTCCTCCGGAACAGCAGAGGACTATGCTTGGTGAAGCTTTGTACCCGCTAGTGGACCAGCTGGAGCATGATGCAGCTGCTAAAGTTACAGGCATGCTATTGGAGATGGATCAGCCAGAGGTATTGCACCTGATTGAATCACCAGATGCTCTCAAGGCGAAAGTTGCCGAAGCAATGGATGTGTTGAGAAATGTTTCTCAACAAGCCAACGCCCCTGCTGATCAACTAGCCTCACTCTCCTTGAATGAGAATCTTGTCTCTTAG 1980 0.4763 MAQIQVQHQSAVSAPPQNGVAAAPSPPLPAGAANGTNQFVTTSLYVGDLDPEVDERHLYDLFNQVGQVVSVRVCSDLTTRRSLGYGYVNYSNPQDAARAIDVLNFTPLNNKPIRIMYSHRDPSIRKSGTANIFIKNLDKAIDHKALHDTFSSFGHILSCKIATDASGQSKGYGFVQFDTEESAQNAIDKLNGMLINDKQVYVGHFLRKQDRDNALGKTTFNNVYVKNLSESVTDDDLKKIFGEYGTITSAVVMRDADGKSKCFGFVNFENPEDAAKAVESLNGKKIDDKEWYVGKAQKKSERENELRRRFEQTVKESVDKYQGVNLYLKNLDDTINDEKLRELFSEFGSITSCKVMRDPNGISRGSGFVSFSTPEEASRALTEMNGKMIAGKPLYVALAQRKEERRARLQAQFSQMRPVAMTPSVAPRMPLYPPGAPGLGQQFLYGQGPPAMIPPQAGFGYQQQLVPGMRPGGAPMPSFFVPMVQQGQRPGGRRGAGPVQQPQQTVPMMQQQLLPRGRYMRYPPGGRNMQDVPLPGVAGGMLSVPYDIGGLPIRDGVGQPVGIQALATALANAPPEQQRTMLGEALYPLVDQLEHDAAAKVTGMLLEMDQPEVLHLIESPDALKAKVAEAMDVLRNVSQQANAPADQLASLSLNENLVS* 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g3514 659 CDD RRM2_I_PABPs 128 204 IPR045305 -
Ahy16g3514 659 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 120 IPR000504 GO:0003723
Ahy16g3514 659 SMART rrm2_1 43 116 IPR003954 GO:0003676
Ahy16g3514 659 SMART rrm2_1 325 397 IPR003954 GO:0003676
Ahy16g3514 659 SMART rrm2_1 222 294 IPR003954 GO:0003676
Ahy16g3514 659 SMART rrm2_1 131 203 IPR003954 GO:0003676
Ahy16g3514 659 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 221 298 IPR000504 GO:0003723
Ahy16g3514 659 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 43 635 IPR006515 GO:0003723
Ahy16g3514 659 Pfam Poly-adenylate binding protein, unique domain 570 634 IPR002004 GO:0003723
Ahy16g3514 659 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 223 291 IPR000504 GO:0003723
Ahy16g3514 659 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 132 200 IPR000504 GO:0003723
Ahy16g3514 659 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 326 394 IPR000504 GO:0003723
Ahy16g3514 659 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 114 IPR000504 GO:0003723
Ahy16g3514 659 CDD RRM4_I_PABPs 323 401 - -
Ahy16g3514 659 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 324 401 IPR000504 GO:0003723
Ahy16g3514 659 Gene3D - 311 414 IPR012677 -
Ahy16g3514 659 Gene3D - 1 129 IPR012677 -
Ahy16g3514 659 Gene3D - 207 310 IPR012677 -
Ahy16g3514 659 PANTHER RNA BINDING PROTEIN 31 644 - -
Ahy16g3514 659 Gene3D - 559 641 - -
Ahy16g3514 659 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 562 639 IPR002004 GO:0003723
Ahy16g3514 659 SMART poly_2 574 637 IPR002004 GO:0003723
Ahy16g3514 659 MobiDBLite consensus disorder prediction 1 16 - -
Ahy16g3514 659 Gene3D - 130 204 IPR012677 -
Ahy16g3514 659 MobiDBLite consensus disorder prediction 486 505 - -
Ahy16g3514 659 CDD RRM1_I_PABPs 43 122 - -
Ahy16g3514 659 SMART rrm1_1 325 397 IPR000504 GO:0003723
Ahy16g3514 659 SMART rrm1_1 43 116 IPR000504 GO:0003723
Ahy16g3514 659 SMART rrm1_1 222 294 IPR000504 GO:0003723
Ahy16g3514 659 SMART rrm1_1 131 203 IPR000504 GO:0003723
Ahy16g3514 659 SUPERFAMILY PABC (PABP) domain 504 649 IPR036053 GO:0003723
Ahy16g3514 659 PANTHER POLYADENYLATE-BINDING PROTEIN 31 644 - -
Ahy16g3514 659 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 130 207 IPR000504 GO:0003723
Ahy16g3514 659 SUPERFAMILY RNA-binding domain, RBD 221 405 IPR035979 GO:0003676
Ahy16g3514 659 CDD RRM3_I_PABPs 220 299 - -
Ahy16g3514 659 SUPERFAMILY RNA-binding domain, RBD 42 211 IPR035979 GO:0003676
Ahy16g3514 659 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g3514 Ahy-Chr16 152689028 152693996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g3514 1 654 Eukaryotic Initiation Factors Gene Family AT4G34110 67.939 0.0 867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g3514 16 152689028 152693996 Ahy20g1606 20 59716092 59721123 ECH
Ahy16g3514 16 152689028 152693996 Ahy16g3514 16 152689028 152693996 ECH
Ahy16g3514 16 152689028 152693996 Ahy6g2761 6 113385023 113389991 hybridization