Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g3511 ATGAAGTCCCTCACAGTCACAGCCAGTGTTTTGAACCCCACAAATCAAACACCGGCCAACAAACTCCACTTCTTCCACTCTCACTCTCTCTCATTCTCACTCTTCTTCCCACACACGTCATCAAACTTGAAATGCCACCATCAAACGCCAATCATCACAGCATGCTCTTCTTCTTCTTCTCCGATCGAAATCGACATGGTGAAGAACAACCAAGGAATCTACACCCCTAAGCACCCCAAAGTAGTCGTCCTCTGGGACCTCGACAACAAGCCCCCACGAGGACCCCCATACGACGCCGCACGCTCCCTCACGCGCCTCGCAACTCACCTCGGCAACGTCGTCGACATCTCCGCCTACGCCAATCGCCACACATTCATCCACCTCCCGCAGTGGGTCCTACAGGATCGCCGGCAGAGAAAGCACCTCGACGTGCTGGAACGGAAGGGCCTGGTGGTGCCGTCAGAGCCCTACAGGTGTTCCGTCTGCGGGAGAAAATGTCGCACCAATCTGGATCTGAAGAAGCATTTCAGGCAGTTGCATGAACGAGAGAGGCAGAAGAAGCTTAATCGGATGAAATCCTTGAAAGGGAAGAAACGGCAGCGTTTTAAAGAGAGGTTTATTCAGGGGAATGAAAAGTATAATGAGGCTGCTAGGTCTCTCATCAGGCCCAAGATTGGTTATGGGCTAGCTTCAGAGCTGAGGAGGGCTGGGGTATATGTGAAGACTGTGGAGGATAAGCCTCAGGCTGCAGATTGGGCATTGAAGAGGCAGATGCAGCACTCAATGACCAGGGGGATTGATTGGCTGGTTTTGGTTTCAGATGATTCGGATTTCGCAGAGATGTTGAGGAGAGCAAGAGAGAGGGAATTGGGGACAGTGGTCGTTGGGGATTGGGATAGGGCACTGGGGAGGCACGCCGATTTGTGGTTTCCTTGGATTGATGTTGAGAATGGGAATGTCTCGGAGAAGGATCTGGTGATCGAGAACAGCAGGAGTAGGGCTCGAAGGGACGGTTTTGTCGTGGAAGAAGAAGATGATGATGGGTTTTTTTCATTGTCGAGATTTGACAGTGGTGGTGGTCATGGGAGTAGTGATTTGGATGAGCTTGTAGATGAACTTGCAGCAGCGAGGACTGATTTTACTGCGGCAATTTCAGAGGAGGATGAAGACGATTATCTGTTGGGGAGTAGTGAGGATGAATACATAGAAGATTATGATGAAGACAGTGATCAAGAAGATGATGGGTTCTATTGA 1254 0.5048 MKSLTVTASVLNPTNQTPANKLHFFHSHSLSFSLFFPHTSSNLKCHHQTPIITACSSSSSPIEIDMVKNNQGIYTPKHPKVVVLWDLDNKPPRGPPYDAARSLTRLATHLGNVVDISAYANRHTFIHLPQWVLQDRRQRKHLDVLERKGLVVPSEPYRCSVCGRKCRTNLDLKKHFRQLHERERQKKLNRMKSLKGKKRQRFKERFIQGNEKYNEAARSLIRPKIGYGLASELRRAGVYVKTVEDKPQAADWALKRQMQHSMTRGIDWLVLVSDDSDFAEMLRRARERELGTVVVGDWDRALGRHADLWFPWIDVENGNVSEKDLVIENSRSRARRDGFVVEEEDDDGFFSLSRFDSGGGHGSSDLDELVDELAAARTDFTAAISEEDEDDYLLGSSEDEYIEDYDEDSDQEDDGFY* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g3511 417 PANTHER - 12 373 - -
Ahy16g3511 417 CDD PIN_LabA-like 167 297 - -
Ahy16g3511 417 ProSitePatterns Zinc finger C2H2 type domain signature. 159 180 IPR013087 -
Ahy16g3511 417 MobiDBLite consensus disorder prediction 387 417 - -
Ahy16g3511 417 PANTHER OS06G0166200 PROTEIN 12 373 - -
Ahy16g3511 417 ProSiteProfiles Zinc finger C2H2 type domain profile. 157 185 IPR013087 -
Ahy16g3511 417 SMART c2h2final6 157 180 IPR013087 -
Ahy16g3511 417 Coils Coil 177 197 - -
Ahy16g3511 417 Gene3D - 74 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g3511 Ahy-Chr16 152640847 152643329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g3511 19 353 C2H2 Transcription Factor Family AT5G52010 66.172 1.22e-158 451
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy16g3511 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g3511 16 152640847 152643329 Ahy16g3511 16 152640847 152643329 ECH
Ahy16g3511 16 152640847 152643329 Ahy6g2758 6 113336842 113339324 hybridization