Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g3500 ATGATGAGTATCCACTCACAAAAATTCTCAACCTCAAGAACTTTGTACAATCTCTTATTGTTAATGTCCCTTCTTTCTATTATCCACACATCAGCACTACACAACACAAAAAACAAAGGCCACGGAAACAAAAGTGTTGCCAAATCAGTTCCAATTGTAGCAGCATCATCTCCAATTTCTCCACCTCTAGTGTTTGCAGATCAAAGGCTTCAATTAGTGTATCCAGTGATCCAAAAATTCAAGTCCACCGTAACCTTAGATCCCTTAGGAGTTACAAAAACTTGGGTAGGTTCAGATATTTGTAGCTACAAAGGTTTCTATTGTGACACTCCACCATACAATAGTTCAGCCGTTGCCTTAGCCTCAATTGATTTCAACGGTTTTCAACTTGTTGCACCTACCCTTGATGGATTCATAGATCAATTACCTGATATTGCTCTGTTCCATGCAAATACCAACAATTTTAGTGGAACAATCACACCCCAGATTTCAAAATTACCTTATCTTTATGAGCTTGATCTTAGTAACAATCAATTATCAGGTCCATTTCCTCTGGCTGTTCTGGGAATGGAAACGTTAACGTTTTTGGACATTAGGTTCAATTTGTTCTCTGGGGCAGTTCCACCACAGATTTTCACACAGAATCTTCAAGTTTTGTTCATCAACAACAACATATTTAATCAGAGTTTGCCTGATAACTTAGGATCCACTCATATTTTGTTGCTAACCTTAGCAAACAACAAGTTCAATGGTCCAATTCCAACAAGTCTTCCAAAGGCTTTAGCCACACTCACTGAAGTGTTGCTATTGAACAACCAGCTAACAGGTTGTTTGCCTTATGAGATTGGTTACCTTCAAGAGGCAACGGTTTTTGACGTTGGGAATAACCAATTGACAGGTCCGTTGCCATTGTCATTGAGTTGTCTTGAGAAGGTTGAGGTTCTGAATTTTGGTGGGAATTTGTTGTATGGTATGGTGCCTGAAGTTGTGTGTGCAAGTTTGATGGGCAATTTGGTAAATTTCTCACTTTCAGATAACTATTTCAATGCTGTGGGACCCATTTGTAGGGTTTTGATTGAGAGAGGAGTTCTTGATGTTACAAAGAATTGCATTCCTGATCTTCCATTCCAGAGATCAATTCTTGAGTGTGCTCAATTCTTTGCACAACCAAGGATGTGTCCATTGATGTGGTATCATAGTTTCATCCCTTGCAAGCTTCATTTTCATAACACTCCACTTTCTTCTATACCCTAG 1254 0.3892 MMSIHSQKFSTSRTLYNLLLLMSLLSIIHTSALHNTKNKGHGNKSVAKSVPIVAASSPISPPLVFADQRLQLVYPVIQKFKSTVTLDPLGVTKTWVGSDICSYKGFYCDTPPYNSSAVALASIDFNGFQLVAPTLDGFIDQLPDIALFHANTNNFSGTITPQISKLPYLYELDLSNNQLSGPFPLAVLGMETLTFLDIRFNLFSGAVPPQIFTQNLQVLFINNNIFNQSLPDNLGSTHILLLTLANNKFNGPIPTSLPKALATLTEVLLLNNQLTGCLPYEIGYLQEATVFDVGNNQLTGPLPLSLSCLEKVEVLNFGGNLLYGMVPEVVCASLMGNLVNFSLSDNYFNAVGPICRVLIERGVLDVTKNCIPDLPFQRSILECAQFFAQPRMCPLMWYHSFIPCKLHFHNTPLSSIP* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g3500 417 PANTHER BNAA09G53810D PROTEIN 22 414 - -
Ahy16g3500 417 SUPERFAMILY L domain-like 86 371 - -
Ahy16g3500 417 Gene3D Ribonuclease Inhibitor 75 237 IPR032675 -
Ahy16g3500 417 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 22 414 - -
Ahy16g3500 417 Gene3D Ribonuclease Inhibitor 242 385 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g3500 Ahy-Chr16 152435116 152436876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g3500 59 390 Leucine-rich Repeat extension Gene Families AT3G24480 41.566 6.73e-85 266
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g3500 16 152435116 152436876 Ahy16g3500 16 152435116 152436876 ECH
Ahy16g3500 16 152435116 152436876 Ahy6g2747 6 113131111 113132871 hybridization