Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g3493 ATGGGCAACACAGCTTCCACGGCCGCCGCCGCCGTCGCTAGTCGCCGCGAGAGCGCCGCTGTTCAAGGAAACCGTTCCGGAATCTCGTCCAAGTCCAGATCTGTTTCTTCCTCGGTCTCTCCGATGATCTCTTCCACCGTGAACTCCGTTGACGACGACGGCGGAAGCCGCCGTGACTTCGTTGAGCCTGATTACATCTCCGATCTTCCCGACGAGTGCTTGGCTTCGGTGTTCCAGTCGCTAAGCTCCGCGGATAGGAACCGGTGCTCGCTCGTTTGCCGGCGGTGGCTCCAGATCGAAGGCCAGAGCCGTCACCGCGTCTCGCTGAACGCGCAATCAGAGCTTTTGCCGGCAATACCGTCGCTGTTCTCGAGGTTCGACTCCGTTACGAAGCTGGCGTTGAAGTGCGACCGCAGATCCGCGAGCATCGGCGACGATGCTCTCGTCTTAATCTCGCGGCGGTGCCCTAATCTCACGCGCCTCAAGCTTCGCGCGTGCCGTGAGCTCACTGACGCAGGCATGGAGGCGTTCGCGAAGAACTGCAAGGGTTTGAAGAAGCTTTCGTGCGGATCTTGCATGTTCGGATCCAGAGCCATGAACGCGGTCCTTGAGAACTGCGGTTCGCTCGAGGAGCTCTCCGTCAAGCGCCTTCGTGGTATTACGGACGCCGCGGCGGCTGAGCCTATCGGTCCAGGCACAGCTGCGCAATCACTTCGTACGATCTGCCTGAAGGAGCTCTACAACGGACAGTGCTTTAGTTCGCTGATTCTCGGCGCAAAGAATCTGCGAACCTTGAAGCTTTTCCGGTGCTCTGGTGATTGGGACAAGCTATTCCAGCTCATCGCGGAGCGCTCCGCGGGCGGCAGCGGTGCTCCTAGCATCGTAGAAATTCACCTCGAGAGGCTTCAGATTAGTGATGTTGGCTTGCAAGCAATTTCTAATTGTTCGAATTTGGAGATTTTGCACCTTGTTAAAACCCCTGAGTGCACCGATGTAGGCTTAATTGCTATTTCTGAGAGATGTAAGCTTCTAAGGAAGCTTCATATAGATGGTTGGAAGGCTAATCGAATTGGTGATGAAGGTTTAATTGGTGTTGCTAAGGGTTGCCCTAATTTGCAGGAATTGGTGCTTATTGGTGTTAACCCTACGAAATTGAGTTTGGAGATGTTGGCTTCGAATTGCTTGAATCTAGAGAGGTTGGCTTTGTGTGGGAGCGATACAGTTGGTGACCCTGAGATATCTTGCATTGCTGCGAAATGTGTGGCTTTGAAGAAACTTTGCATCAAGGGTTGCCCTGTTTCGGATCATGGGATGGAGGCATTGGCTAGTGGATGTCCAAATTTGGTGAAGGTGAAGGTGAAGAAGTGTAAGGGTGTTACATCTGAGGGTGGGGATTGGTTGAGGCAGATTAGGGTGTCACTTGCAGTGAATTTGGATACTGGCGATACGGATCATCAAGATGCAAGTGCTAGTGATGGTGGAGCACAGGACAATGGATTGGAGTTTCCTCCAATGGCTGCCCATAATGCCGGAGGAGCCGGAGGAGGTGCATCAGCCGGTGTTGCTTCGAGTAGTACCGGTCGATCTACTTCATTTAAGTCGAGGTTAGGGCTTTTGTCCGGGAGGAGTTTAGTAGCTTGCACTTTGAGAAAGTGGACTGGTGGTAACACCAGTGCCCGGCATGGTTAG 1689 0.5346 MGNTASTAAAAVASRRESAAVQGNRSGISSKSRSVSSSVSPMISSTVNSVDDDGGSRRDFVEPDYISDLPDECLASVFQSLSSADRNRCSLVCRRWLQIEGQSRHRVSLNAQSELLPAIPSLFSRFDSVTKLALKCDRRSASIGDDALVLISRRCPNLTRLKLRACRELTDAGMEAFAKNCKGLKKLSCGSCMFGSRAMNAVLENCGSLEELSVKRLRGITDAAAAEPIGPGTAAQSLRTICLKELYNGQCFSSLILGAKNLRTLKLFRCSGDWDKLFQLIAERSAGGSGAPSIVEIHLERLQISDVGLQAISNCSNLEILHLVKTPECTDVGLIAISERCKLLRKLHIDGWKANRIGDEGLIGVAKGCPNLQELVLIGVNPTKLSLEMLASNCLNLERLALCGSDTVGDPEISCIAAKCVALKKLCIKGCPVSDHGMEALASGCPNLVKVKVKKCKGVTSEGGDWLRQIRVSLAVNLDTGDTDHQDASASDGGAQDNGLEFPPMAAHNAGGAGGGASAGVASSSTGRSTSFKSRLGLLSGRSLVACTLRKWTGGNTSARHG* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g3493 562 Pfam Leucine Rich repeat 155 178 IPR001611 GO:0005515
Ahy16g3493 562 Gene3D - 65 103 - -
Ahy16g3493 562 SUPERFAMILY RNI-like 105 488 - -
Ahy16g3493 562 PANTHER F-BOX PROTEIN SKIP2 51 481 - -
Ahy16g3493 562 Pfam F-box domain 66 99 IPR001810 GO:0005515
Ahy16g3493 562 PANTHER UNCHARACTERIZED 51 481 - -
Ahy16g3493 562 MobiDBLite consensus disorder prediction 1 56 - -
Ahy16g3493 562 SUPERFAMILY F-box domain 55 99 IPR036047 GO:0005515
Ahy16g3493 562 MobiDBLite consensus disorder prediction 482 526 - -
Ahy16g3493 562 Gene3D Ribonuclease Inhibitor 104 494 IPR032675 -
Ahy16g3493 562 MobiDBLite consensus disorder prediction 19 51 - -
Ahy16g3493 562 ProSiteProfiles F-box domain profile. 63 109 IPR001810 GO:0005515
Ahy16g3493 562 SMART fbox_2 69 109 IPR001810 GO:0005515
Ahy16g3493 562 SMART LRR_CC_2 181 205 IPR006553 -
Ahy16g3493 562 SMART LRR_CC_2 445 473 IPR006553 -
Ahy16g3493 562 SMART LRR_CC_2 369 393 IPR006553 -
Ahy16g3493 562 SMART LRR_CC_2 420 444 IPR006553 -
Ahy16g3493 562 SMART LRR_CC_2 155 180 IPR006553 -
Ahy16g3493 562 SMART LRR_CC_2 394 419 IPR006553 -
Ahy16g3493 562 SMART LRR_CC_2 341 368 IPR006553 -
Ahy16g3493 562 SMART LRR_CC_2 206 244 IPR006553 -
Ahy16g3493 562 SMART LRR_CC_2 315 340 IPR006553 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g3493 Ahy-Chr16 152360650 152362866 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g3493 16 152360650 152362866 Ahy16g3493 16 152360650 152362866 ECH
Ahy16g3493 16 152360650 152362866 Ahy6g2740 6 113056645 113058861 hybridization