Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g3485 ATGGATCGAGTTAAGGGCCCGTGGAGCCCGGAGGAGGACGAGACGCTGAGGAGGCTGGTGGGAGCCCACGGGCCGAGAAACTGGACTATTATCAGCAAGTCCATTCCAGGCCGATCCGGCAAGTCGTGCCGGTTGCGGTGGTGCAACCAGCTGTCACCGGAGGTGGAGCACCGCGCATTCACGCCGGAGGAGGACGATATCATCGTCAGAGCCCACGCTGAGTTCGGAAACAAGTGGGCCACGATAGCCCGGTTACTTAACGGAAGAACCGATAACGCCGTCAAGAATCACTGGAACTCTACGCTCAAAAGGAAATGCCGCTCTTCTGCTTCTGACGCCGTCACCGTCGCCGTTTACCCCGACGCGCAGCCTCTTAAAAGATCCGCCAGTGTCGGCCCGTGCCACGTTACCACGCCTAGCAGCCCGTCGGGCTCTGAGCTCAGCGATCCGGGGCTTCCCTCTCTGTCAGCTCCGGGTTCGGATCCAAGAACGTTGCTGAGCTTGTCGCTGCCGGGATCATCGGGATCAGGCGCAGGCTCAGATTCGATTAAAGATGGGCTTGGTTCTGGGCTTAGTCCTGATCCTGACCCGGCCCAAATGTTCAGTCCGGAGTTCTTGGCGATGATGCAAGAAATGGTGAGGAAAGAGGTTAGGAATTACATGTCGATGGTTGAAGAGAACGGGGTTCGCATGCAGCAGACGGAAGCGATTCGAAACGGTGTTATGAAACGAATGGGAATTAGAAACGGAATAGAGAGGTAA 762 0.5696 MDRVKGPWSPEEDETLRRLVGAHGPRNWTIISKSIPGRSGKSCRLRWCNQLSPEVEHRAFTPEEDDIIVRAHAEFGNKWATIARLLNGRTDNAVKNHWNSTLKRKCRSSASDAVTVAVYPDAQPLKRSASVGPCHVTTPSSPSGSELSDPGLPSLSAPGSDPRTLLSLSLPGSSGSGAGSDSIKDGLGSGLSPDPDPAQMFSPEFLAMMQEMVRKEVRNYMSMVEENGVRMQQTEAIRNGVMKRMGIRNGIER* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g3485 253 PANTHER TRANSCRIPTION FACTOR MYB44-LIKE 2 154 - -
Ahy16g3485 253 CDD SANT 7 49 IPR001005 -
Ahy16g3485 253 Gene3D - 58 118 - -
Ahy16g3485 253 MobiDBLite consensus disorder prediction 133 150 - -
Ahy16g3485 253 PANTHER MYB PROTEIN-RELATED 2 154 - -
Ahy16g3485 253 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 106 IPR017930 -
Ahy16g3485 253 CDD SANT 59 102 IPR001005 -
Ahy16g3485 253 ProSiteProfiles Myb-like domain profile. 52 102 IPR001005 -
Ahy16g3485 253 SUPERFAMILY Homeodomain-like 2 98 IPR009057 -
Ahy16g3485 253 MobiDBLite consensus disorder prediction 160 180 - -
Ahy16g3485 253 SMART sant 56 104 IPR001005 -
Ahy16g3485 253 SMART sant 4 53 IPR001005 -
Ahy16g3485 253 Pfam Myb-like DNA-binding domain 59 101 IPR001005 -
Ahy16g3485 253 Pfam Myb-like DNA-binding domain 5 51 IPR001005 -
Ahy16g3485 253 Gene3D - 4 56 - -
Ahy16g3485 253 ProSiteProfiles Myb-like domain profile. 1 51 IPR001005 -
Ahy16g3485 253 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 55 IPR017930 -
Ahy16g3485 253 MobiDBLite consensus disorder prediction 128 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g3485 Ahy-Chr16 152207431 152208538 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g3485 1 229 MYB Transcription Factor Family AT4G37260 49.638 1.04e-78 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ahy16g3485 Myb_DNA-binding 1.30E-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g3485 16 152207431 152208538 Ahy15g0605 15 7659974 7661658 ECH
Ahy16g3485 16 152207431 152208538 Ahy11g1000 11 22159091 22160604 ECH
Ahy16g3485 16 152207431 152208538 Ahy16g3485 16 152207431 152208538 ECH
Ahy16g3485 16 152207431 152208538 Ahy6g2734 6 112936162 112937247 hybridization