Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g3484 ATGGCCCACCAAGAGAACCCCACGCGCCCTCAGCGCGAGGCCAAAAAGAGGGCAGCAGCTGCACTCTCCGAGCTCCAAACCGGCGCGTCCAAGAAGAAGCGCGTCGTGTTGGGCGAACTCACTAACATCAGCAACCCCAGCGTTGCACCACCACAACCACAACAACCTGCCAAGCCGGTTCTCGGTAACCGCCGGTTTAGTCAGAACGAGGAGAAAATAAAAACCACCACTACCAGGGGAAAGAAGAGAACGGTCGGGAAAAACCAGAAACCGGCGGTGACTCCACCGGAAACTGTTGACGCCGCAAAGAAGCCGGAAGTTACTGTTGATCCGCAATTATGTGCTCCTTATGTTTCTGATATCTACGATTATCTTCGTAAAATGGAGGAAGATCCAAGTAAGAGGCCATTACCGGATTATGTGCAGAAAGTGCAGAGGCATGTGAATGCAAACATGAGGGGTGTTCTTGTGGATTGGTTAGTAGAGGTTGCCGAGGAGTATAAGCTTGTTTCCGATACCCTTTACTTCTCAGTTTCGTACATTGACAGATACTTGTCTTTGACTGCCTTATCAAGTCAAAAGCTGCAGTTGCTTGGTGTTTCGGCAATGCTTATTGCATCAAAATATGAGGAGATAAAGCCACCTGAAGTGGAAGAATTTTGTTACATTACAGACAACACATACACCAAGGATCAGGTTGTGGAGATGGAAGCTGATATATTGAAGTCTTTGAAGTTTGAATTGGGTGGTCCAACAGTAAAGACCTTTCTAAGGTGCATGCACATAAGATTCTCTAAAGTTGCTCAAGAGAGCAAAGATACATCAGACTTGCAATTTGAGTTTCTCACTAGCTACCTCGCAGAGCTCAGTTTGTTGGATTATAATTGTGTGAAATTCTTGCCTTCTTTGGTGGCAGCATCTGTTGTATTTCTAGCAAGATTTATGCTAAGCCCAAAGACACATCCTTGGAATGCAGCACTTTATCAACTCACTAGATATAAACCTGCCGAATTGAAGGAATGTGCTCAAAATATACATGATCTGTACCTCAGCAGGAGAGGTGGCTCTTTGCAAGCTGTGAGAGAGAAATACAAACAACATAAGTTCAAATGCGTGGCCACAACTCCATCACCTCCAGAGATTCCCGTTTCTTATTTTGAATTTAGAGTGGCAGATCCATAG 1182 0.4526 MAHQENPTRPQREAKKRAAAALSELQTGASKKKRVVLGELTNISNPSVAPPQPQQPAKPVLGNRRFSQNEEKIKTTTTRGKKRTVGKNQKPAVTPPETVDAAKKPEVTVDPQLCAPYVSDIYDYLRKMEEDPSKRPLPDYVQKVQRHVNANMRGVLVDWLVEVAEEYKLVSDTLYFSVSYIDRYLSLTALSSQKLQLLGVSAMLIASKYEEIKPPEVEEFCYITDNTYTKDQVVEMEADILKSLKFELGGPTVKTFLRCMHIRFSKVAQESKDTSDLQFEFLTSYLAELSLLDYNCVKFLPSLVAASVVFLARFMLSPKTHPWNAALYQLTRYKPAELKECAQNIHDLYLSRRGGSLQAVREKYKQHKFKCVATTPSPPEIPVSYFEFRVADP* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g3484 393 ProSitePatterns Cyclins signature. 153 184 IPR006671 -
Ahy16g3484 393 SUPERFAMILY Cyclin-like 110 248 IPR036915 -
Ahy16g3484 393 Pfam Cyclin, C-terminal domain 251 377 IPR004367 -
Ahy16g3484 393 MobiDBLite consensus disorder prediction 67 97 - -
Ahy16g3484 393 SUPERFAMILY Cyclin-like 251 380 IPR036915 -
Ahy16g3484 393 Pfam Cyclin, N-terminal domain 120 248 IPR006671 -
Ahy16g3484 393 CDD CYCLIN 152 241 IPR013763 -
Ahy16g3484 393 SMART cyclin_7 158 242 IPR013763 -
Ahy16g3484 393 SMART cyclin_7 255 347 IPR013763 -
Ahy16g3484 393 SMART Cyclin_C_2 251 378 IPR004367 -
Ahy16g3484 393 MobiDBLite consensus disorder prediction 1 19 - -
Ahy16g3484 393 PANTHER CYCLINS 25 389 IPR039361 -
Ahy16g3484 393 MobiDBLite consensus disorder prediction 1 31 - -
Ahy16g3484 393 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 25 389 - -
Ahy16g3484 393 Gene3D - 136 249 - -
Ahy16g3484 393 Gene3D - 120 374 - -
Ahy16g3484 393 CDD CYCLIN 251 346 IPR013763 -
Ahy16g3484 393 PIRSF Cyclin_A_B_D_E 1 385 IPR039361 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g3484 Ahy-Chr16 152169688 152172930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g3484 1 387 Core Cell Cycle Gene Families AT1G47230 55.670 2.53e-148 423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g3484 16 152169688 152172930 Ahy16g3484 16 152169688 152172930 ECH
Ahy16g3484 16 152169688 152172930 Ahy6g2733 6 112902010 112905195 hybridization
Ahy16g3484 16 152169688 152172930 Ahy17g3249 17 134582828 134584868 PCT
Ahy17g3249 17 134582828 134584868 Ahy16g3484 16 152169688 152172930 PCT