Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g3459 ATGGCTACAAAAGGCACCGATCGCTCATTCAGCGGCACTAACCACTCACCAATGGCGTCCGCCGAGCAGCCACTGAAGAAGCGAAAGCATTACGACACTCTCCCGGAATCCCCACCGCCGCCACCACCGCCGCTGGCACCATCCGAAGAAGTTCCACCACCGCCTTCGCCGCCACAATCTCCTCAAACCCTACTTCGTCCGCCTACTCCTCCTCCTCCGCCTCTGTCACAGGATGAGGTCGTCACCAAGCGGAGGAACAAAGATGAGGTTCGAACCGTGTTTGAGTGCTACCGTCGCATCAAGCTCTTCTTGTCAAAGAAGGAAGGTGCTTTCATCCATGACCTTGAACAGAGCTTCTTCGCTCTCATCAATGCTTCCAGAGGTTGTTTGAGTGCACAAAGAATCGCGGCTGATGTTATTCCTCGATATGCATTCCGCTGTCCAACAGCTTTAGAAGCTGCTGCTAAAGTGGTTATCAATATGTATAACTGGAGTTCCACACTAATCAGTAGAGGAGAAGATGCTGATGGTGTTGCATTTGAAACTGCTAGAGCTTGTATTTTTGGCTTAGCTGATATTTGCTGTGCTGCTTCTTCAGTGGCACCAAAATCTGCTGTAATCAGAGGAATTTGCTCTGCAGTTTTTCAGAATGTGCTATTCTTTTTCATATCTTTACTTGAGGGAAAGGACGCCTTACAGGTGTTCGATAAGAGTTTCCTGAAAATGCAAGATTCCCCTGATGAATTTTCTAAGTTGAAGCAAAAAGTTTTAGATGAAGATGAGTCCTCATTGACTAAATTGTCAAAACTCCATGCAGTATGTTTATTTTGGATATTCTTCTCTTGCCCAAAAGACATGCTTGCAGCTTGTTTGGAGCTCTTAGGCTCTGCCACAAAGGAGGGTGCCTCTGAACAAGGACAATGTTTTCTGAGCCTGGTGACTAGAAATGTTTTGGTTGATGAAGCAGTTTGCCTTTTGGATAATGTTAATGGCGGATCTAAGCCAGGTACAGGTTCAACAGATTCAGCTATCCGCGAAAACGAGGTTGATGAGGAAATAATGACAGATGTCAACCGAGTTGCCGGTGTTGATTCGTCTATTCCAAAGAGTTGCTTGCTCACACTGGTCCTTGACAAAGATCCCTCACTACAGAAATGGATGTCACGCAAATGTAAGAAGTTATTGGACTTGCCTACTACTGCTTCAATGGAAATTACAGCAGTACTTCTAGGAATTCTTGGAAAGTTTGTTCCACAAACTGATTTGGAAGACTACCAACTAGATAGTGATGAAGATAGATCTGATTCTTCGATTTACACAAATAGGAACTATGCGGTACCTAGGATTTCAGAGGAACGTGACAGTATTGGTGAAACATCTGGAAGAGTTTCTCTTGGCACCAACCCTGTATCAAAAGTAGGTTCACATTTCGACAATGGAGCTTCAAGGCCCATGGGCATTGAGATGGGGGAGGGAGGGAGTATGTCCCATGCTAGATGTTCCACACCTAGGGATTCAGCAACCCATCAAATAACCTCATCTTCAATGAAGACACCATTTGGCTCTAGGAGTAATTCATTTGAAGCTGCTTCAACAAAAAGTCAAACTGTCTGGTGCTTTGATGGGGATCCTGCTGCCATGGATATTGTCTCTGCTTCAACAAGGCTCTGGGTTGGTTTTATACCACCTGACGTGCCTGAAAGCCATATTAGGTTTCAATCAGAAAGATATGGTCAAATTGAACGGTTTGTTTTCTTCCCCATGAAAGGTTTTGCCTTTGTTGAGTACAGAAGAATCATTGATGCAATCAAAGCTAGACACTATCTACCGGGAAACTTCCCGTGTCGTGTAAAATTCATCGATACAGGATTTGGAACTAGGGGTGCAATGAATGGTGTTGCAGTTGGCTCTAGTTCTCATATCTATGTTGGAAATATTTCTTCTCAATGGGCCAAGGATGAGATCCTACATGAATCAAGAAAAGTAATCCATAAAGGTCCTCCTGCACTTATTGATCTCAGCTGTGAGTGTGCATTACTTATGGAATTTGAAACTCCTGAAGAAGCTACCTCTGTCATGTTGCATCTGAGACAGTTTCGAAGAGAAAGAAGCAACTATAACTTGCATTTTGTCCCAGGAACAGTTAATGCTGGAATTGGGCACCCGTATATGGACGGTTCAAGGTCTGCATCTGCCCCTTCCCATCCTGACCTTAAAGTTAGCATCCCAACAAACATGTCACATGGTATTTCTGGATCACCTCATGCTCGAACCTTACCTGTGAGCCCTGCTGACAGTTCTCGCACAAGGATGTCTCACTTGTCTTCGTTGCTAGCTTCATTGTGTACAAAATACAATATTAATCAAAACATAGGTCTCCATGATCACTATATGACTGGAACTGGTAACAGTTATGCTCCTTCGATGCGTGATGAAGATACAGCACCATCCAGTACTTTGTGGATAACTATTCCATGGAGTAGCTCTCCATTCCTCACAGACGATGAACTAATGACTATCTGCAATCTTGCTATTGGAGGCTCTGGCTCCATTTTGCGGTTGACACAGGCAAACATGCAGATGCCGTGTGGTTGGTTTGTTGAATGCAGTAATACTGATGGTGCAGTTTCTGTTCTAAAGAATCTTCGTAGTTGTCCAGGGTTGTTCTTCCAAGTAGAATTCAGTAAATCTGGAAATCAGACTGCCGGACCTTCTTCAGCCAAACCAGAGGGCAACTCCATGGAACTTGTATCCCCCAGAACAAATTCCCAGAATCACAGTAGTGGAATACACCGTGCACCTCCACCCCAGTCGAACTGGCATTTTCCTGGTTCCAGTAACATGCCAGAAGTTGGAGCAAGGAAAACTGATGGTTATGATAATGTATCACTAGACACTCATCAAGGAGCTAACATTCAACATATGTACTCTGGAACTCAAGGACCTTCCATTCCGCCACCACAACAAATTCAGTCAGCTCCCTTCGTTCGCCCTGTTTATGCCCCTCCAAATGGTCCGTGGGATCCACGTGGAATAAATAATCCTTTACCTGCCAATCACTTCACGCCTGGAGTGATGCCTAATAATCATTTACCATTTATACCTGCTTCAGTAACTCCACTTGCTCACATCCAGGGAACCCCAATGCATCCTTATGGCCAGCTGATGCCCCCACCAGTAATGGCACCACCTTTGGCTTCCTTACCACATCCTCAGCTTGAAATTCCACCTCCACCTCCACCTCCACCTCCACCTGCACGTCTGCCTTCTCCACCACCCTTGCCCCAAACTCAGCCACCCATGGTTCCTCCACCACCTGGTTCTCCTCCACCTCCTCCTCCACCATTGCCTGCTCAGGAAGCAGTTAGTATGGAATGTTCAGGGCAGTCTCTGCAGTATCAGTGGCAGGGGGCTCTTTGTAAAAGCGGGGTTAACTACTGCACAATTTATGCATGCCGAGCAGATTCAAATGTTTGCAAATACACAAATGCCACACCTGAACCTTCTGAGTGGCCCACAAAACTAGACATGACTAAACGCACTGATATTCGACATGTGAAATCAACATTTGCAGCTACACCACCTAATAGGAGGGAAGTGTGCCGTTTAATCCCATCTTCCCCAAGTGAACACAAACGGTTTCAGGATTTCATAACATACTTAAAGCAGAGGGATTGTGCCGGAGTCATTAAAATCCCAGCCGCAAAATCCATGTGGGCAAGGCTGCTGTTCATACTCCCATACTCGCCTGAAACATGCACTTTGCTTTCTATTGCACCACATCCATCTGATTGCCTCATCGCTTTGGTTCTTCCAAAAGAAATGAACTTTGAGTGGGCATGA 3843 0.4536 MATKGTDRSFSGTNHSPMASAEQPLKKRKHYDTLPESPPPPPPPLAPSEEVPPPPSPPQSPQTLLRPPTPPPPPLSQDEVVTKRRNKDEVRTVFECYRRIKLFLSKKEGAFIHDLEQSFFALINASRGCLSAQRIAADVIPRYAFRCPTALEAAAKVVINMYNWSSTLISRGEDADGVAFETARACIFGLADICCAASSVAPKSAVIRGICSAVFQNVLFFFISLLEGKDALQVFDKSFLKMQDSPDEFSKLKQKVLDEDESSLTKLSKLHAVCLFWIFFSCPKDMLAACLELLGSATKEGASEQGQCFLSLVTRNVLVDEAVCLLDNVNGGSKPGTGSTDSAIRENEVDEEIMTDVNRVAGVDSSIPKSCLLTLVLDKDPSLQKWMSRKCKKLLDLPTTASMEITAVLLGILGKFVPQTDLEDYQLDSDEDRSDSSIYTNRNYAVPRISEERDSIGETSGRVSLGTNPVSKVGSHFDNGASRPMGIEMGEGGSMSHARCSTPRDSATHQITSSSMKTPFGSRSNSFEAASTKSQTVWCFDGDPAAMDIVSASTRLWVGFIPPDVPESHIRFQSERYGQIERFVFFPMKGFAFVEYRRIIDAIKARHYLPGNFPCRVKFIDTGFGTRGAMNGVAVGSSSHIYVGNISSQWAKDEILHESRKVIHKGPPALIDLSCECALLMEFETPEEATSVMLHLRQFRRERSNYNLHFVPGTVNAGIGHPYMDGSRSASAPSHPDLKVSIPTNMSHGISGSPHARTLPVSPADSSRTRMSHLSSLLASLCTKYNINQNIGLHDHYMTGTGNSYAPSMRDEDTAPSSTLWITIPWSSSPFLTDDELMTICNLAIGGSGSILRLTQANMQMPCGWFVECSNTDGAVSVLKNLRSCPGLFFQVEFSKSGNQTAGPSSAKPEGNSMELVSPRTNSQNHSSGIHRAPPPQSNWHFPGSSNMPEVGARKTDGYDNVSLDTHQGANIQHMYSGTQGPSIPPPQQIQSAPFVRPVYAPPNGPWDPRGINNPLPANHFTPGVMPNNHLPFIPASVTPLAHIQGTPMHPYGQLMPPPVMAPPLASLPHPQLEIPPPPPPPPPPARLPSPPPLPQTQPPMVPPPPGSPPPPPPPLPAQEAVSMECSGQSLQYQWQGALCKSGVNYCTIYACRADSNVCKYTNATPEPSEWPTKLDMTKRTDIRHVKSTFAATPPNRREVCRLIPSSPSEHKRFQDFITYLKQRDCAGVIKIPAAKSMWARLLFILPYSPETCTLLSIAPHPSDCLIALVLPKEMNFEWA* 1281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g3459 1280 MobiDBLite consensus disorder prediction 1 20 - -
Ahy16g3459 1280 MobiDBLite consensus disorder prediction 1 84 - -
Ahy16g3459 1280 MobiDBLite consensus disorder prediction 460 475 - -
Ahy16g3459 1280 MobiDBLite consensus disorder prediction 455 523 - -
Ahy16g3459 1280 PANTHER NUCLEIC ACID BINDING PROTEIN 18 1279 - -
Ahy16g3459 1280 MobiDBLite consensus disorder prediction 499 523 - -
Ahy16g3459 1280 SUPERFAMILY RNA-binding domain, RBD 543 613 IPR035979 GO:0003676
Ahy16g3459 1280 SMART rrm1_1 555 618 IPR000504 GO:0003723
Ahy16g3459 1280 CDD RRM3_Spen 556 621 - -
Ahy16g3459 1280 Gene3D - 545 627 IPR012677 -
Ahy16g3459 1280 MobiDBLite consensus disorder prediction 1063 1119 - -
Ahy16g3459 1280 Pfam SPOC domain 1129 1271 IPR012921 -
Ahy16g3459 1280 MobiDBLite consensus disorder prediction 1063 1123 - -
Ahy16g3459 1280 MobiDBLite consensus disorder prediction 897 959 - -
Ahy16g3459 1280 MobiDBLite consensus disorder prediction 35 77 - -
Ahy16g3459 1280 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 556 611 IPR000504 GO:0003723
Ahy16g3459 1280 MobiDBLite consensus disorder prediction 897 945 - -
Ahy16g3459 1280 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 2 ASC-1 COMPLEX SUBUNIT P100 18 1279 - -
Ahy16g3459 1280 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 554 648 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g3459 Ahy-Chr16 151899325 151910415 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g3459 16 151899325 151910415 Ahy6g2711 6 112666335 112677860 hybridization