Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g2125 ATGTCTAAAACTCAAGAGAATGATCAAGGTATCATGCTATTTGGAAGGAAGATTCCATTGCCTGAATCTCAGATTCCAGCCATCTCTAGACACATCATGAACCCAGAGCAAGAAATGAGTTCCTCAGATTCAAGGGATGATAAAAAAGGTTCGCAACATAATGATGAAGCAACAAATGAAGAAGACAAAACCATGAAGAAACCAGACAAGATTATTCAGTGTCCAAGATGCAAGAGCATGGACACAAAATTCTGTTACTTCAACAACTACAACGTCAACCAACCGCGCCATTTCTGCAAGAACTGCCAGCGCTACTGGACAGCCGGCGGAACAATGAGGAATGTCCCCGTTGGCGCCGGCAGAAGGAAGCACAAGCACTTGGCTTCACAGTTCCGCAGTGTCCTAGTAGCCGCGGCTGCAGCCGCGGCCACCCGAGTTCCAGAATTCACAAACTCATCGTCAAAAAATAATAATAGTGACAATGCTAGTGGTACCGTGTTGGAATTTGGTCAGGAAAGAGGAATTGTGAATGAAAATTCGTCTATCATTTATTGTACTGAATCTGAGGAGGAATCATTATCGTTGTGTACTAACAATAATAATGAATCTTCTTCAGAAAACAACAACAACGCATCAAAATTGTTGCAATGTTACCCTGTTCCTCCATGGGTTATGCCTTGGAACAATGTTGTTCCACAACATGGTCCAAATTCAATTCAATGGTGTCCAACACCAATGGTGGCAGCAGCAACAATTCCTGTTCATCTTGTTCCAGGGCCATACTGGGGTGGAACACCTATGTGGGTCGCACCTGGACCTGCACCGGGGAATGTGTCAATAGGATCCAATCATAGCCGTTCATCGCCTTCTTCGTCCACTAGTAATAACAATAGCTGCTATTCCGGCAACGGGAATTCTCCAATACTTGGCAAGCATAGTAGAGATCACAGTACTGTTTTCATTGATGAACAGAAATCAAGTAAATGTTTCTTGGTTCCGAAGATTCCGAGAATTGATGAGCCAAATAATAGTGAGGCTTCAGTAAGTCCTATTTGGGCTACATTGGCATGA 1071 0.4351 MSKTQENDQGIMLFGRKIPLPESQIPAISRHIMNPEQEMSSSDSRDDKKGSQHNDEATNEEDKTMKKPDKIIQCPRCKSMDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKHKHLASQFRSVLVAAAAAAATRVPEFTNSSSKNNNSDNASGTVLEFGQERGIVNENSSIIYCTESEEESLSLCTNNNNESSSENNNNASKLLQCYPVPPWVMPWNNVVPQHGPNSIQWCPTPMVAAATIPVHLVPGPYWGGTPMWVAPGPAPGNVSIGSNHSRSSPSSSTSNNNSCYSGNGNSPILGKHSRDHSTVFIDEQKSSKCFLVPKIPRIDEPNNSEASVSPIWATLA* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g2125 356 Pfam Dof domain, zinc finger 69 126 IPR003851 GO:0003677|GO:0006355
Ahy16g2125 356 MobiDBLite consensus disorder prediction 1 67 - -
Ahy16g2125 356 MobiDBLite consensus disorder prediction 279 312 - -
Ahy16g2125 356 ProSiteProfiles Zinc finger Dof-type profile. 72 126 IPR003851 GO:0003677|GO:0006355
Ahy16g2125 356 MobiDBLite consensus disorder prediction 40 67 - -
Ahy16g2125 356 PANTHER CYCLIC DOF FACTOR 3-LIKE 40 355 - -
Ahy16g2125 356 PANTHER CYCLIC DOF FACTOR 2 40 355 IPR045174 GO:0003700|GO:0006355
Ahy16g2125 356 MobiDBLite consensus disorder prediction 279 313 - -
Ahy16g2125 356 ProSitePatterns Zinc finger Dof-type signature. 74 110 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g2125 Ahy-Chr16 118887780 118891025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g2125 36 356 C2C2-Dof Transcription Factor Family AT3G47500 34.444 1.15e-51 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Ahy16g2125 zf-Dof 2.70E-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g2125 - - ahf:112696882 614.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g2125 16 118887780 118891025 Ahy16g2125 16 118887780 118891025 ECH
Ahy16g2125 16 118887780 118891025 Ahy6g1830 6 89558879 89562177 hybridization