Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy15g1919 ATGGGTAGAGGGAAGGTGGAGCTGAAGAGGATTGAGAACAAGATAAACAGGCAAGTGACGTTTGCAAAGAGAAGAAACGGTTTGCTGAAGAAGGCTTATGAGCTTTCTATCCTCTGTGATGCCGAAGTTGCTCTCATTATCTTCTCCAACCGTGGCAAGCTCTATGAGTTCTGCAGCACTTCTAGCATGGCGAAGACACTTGAACGGTACCAGAAATGCAGTTATGGAGCCTTGGAAGTAAATCACCAACCTGCTGTGGAGACACAGAGGCGCTATCAAGAGTATCTCAAGCTGAAATCAAAAGTTGAGGCACTACAGAAGACTCAAAGAAATCTCCTTGGGGAAGAATTGGATAACTTAGATGTTAACGAGCTTGAACGGCTTGAGCGTCAGCTGGACTCTTCATTGAAGCAAATTAGGTCTAACAAGACACAACTTTTGCTCGACCAACTCTCGGATTTGCAAAGAAAGGAAGAGATGCTGTTGGAAACAAATAATGTCCTCCGGAGCAAGGTATCAAGACAAAACACTACTGTTGTTCATTTGGAGGAAATTAATATGGCGATTCAACCAACATGGGAAGCTAGGGAGCAAAATGCTCCCTACAGCCGACACCCTCAGCAATCAGAGGGATACTATGAGACAACACAATGCAATAGCACATTACAAATTGGATACGGTTCTTCGGTGACAAATGATGCAGTAGGTGGTGCAGGAACATCAACCCAAAATGCTAGTGAATTCTTGCATGGATGGATGGAAGTATAA 768 0.4401 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSILCDAEVALIIFSNRGKLYEFCSTSSMAKTLERYQKCSYGALEVNHQPAVETQRRYQEYLKLKSKVEALQKTQRNLLGEELDNLDVNELERLERQLDSSLKQIRSNKTQLLLDQLSDLQRKEEMLLETNNVLRSKVSRQNTTVVHLEEINMAIQPTWEAREQNAPYSRHPQQSEGYYETTQCNSTLQIGYGSSVTNDAVGGAGTSTQNASEFLHGWMEV* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy15g1919 255 Pfam K-box region 87 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ahy15g1919 255 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Ahy15g1919 255 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ahy15g1919 255 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ahy15g1919 255 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Ahy15g1919 255 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Ahy15g1919 255 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Ahy15g1919 255 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 1 237 - -
Ahy15g1919 255 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Ahy15g1919 255 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ahy15g1919 255 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ahy15g1919 255 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ahy15g1919 255 PANTHER MADS BOX PROTEIN 1 237 - -
Ahy15g1919 255 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
Ahy15g1919 255 Coils Coil 122 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy15g1919 Ahy-Chr15 91972906 91996573 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ahy15g1919 K-box 3.80E-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g1919 15 91972906 91996573 Ahy15g1919 15 91972906 91996573 ECH
Ahy15g1919 15 91972906 91996573 Ahy14g3054 14 139311563 139316915 ECH