Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g4552 ATGGCTCCATTAGAAAAAACTGGACAAGAAAGAGAAGGGATTAAACTGTTTGGCATAACGATCACGTTGCATGCAGCAGAAAGAAAAGAAGATGAGAAAAGCAGCAATGGTAGCGAAGAAGATGATGATCATGATCATGATCATGGAGAAGATCAAGAAGAGATGATGAAGAAACCAAACAAGATCATAGCATGTCCAAGATGCAAGAGCATGGAAACCAAGTTTTGTTACTTCAATAACTACAACGTTAATCAGCCTAGGCATTTCTGCAAGGCCTGCCACAGGTATTGGACCGCCGGAGGGGCCCTTCGCAACGTCCCTGTCGGTGCAGGCCGCCGAAAGGGTAAGCTGCCGTGCCCTGCCGCCGCCCGTCACGGTGGCGCCATCTGTGATTCATCATCCACTGTTCAGAAATTTGGATTAGATGATGAAGAGGAGGGGTTGGTTTTGGACGAGTGGGATGTTGCCACCGTCATTCACGGTGGTTTCCGGCAGCTTTTTCATCAGTCGTCTAAACGGCGGAGGACGAGCTCTGAGGATGGTCAACCTTGTTAA 555 0.4847 MAPLEKTGQEREGIKLFGITITLHAAERKEDEKSSNGSEEDDDHDHDHGEDQEEMMKKPNKIIACPRCKSMETKFCYFNNYNVNQPRHFCKACHRYWTAGGALRNVPVGAGRRKGKLPCPAAARHGGAICDSSSTVQKFGLDDEEEGLVLDEWDVATVIHGGFRQLFHQSSKRRRTSSEDGQPC* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g4552 184 ProSitePatterns Zinc finger Dof-type signature. 65 101 IPR003851 GO:0003677|GO:0006355
Ahy13g4552 184 ProSiteProfiles Zinc finger Dof-type profile. 63 117 IPR003851 GO:0003677|GO:0006355
Ahy13g4552 184 PANTHER DOF ZINC FINGER PROTEIN DOF1.5-LIKE 9 179 - -
Ahy13g4552 184 Pfam Dof domain, zinc finger 61 116 IPR003851 GO:0003677|GO:0006355
Ahy13g4552 184 MobiDBLite consensus disorder prediction 25 57 - -
Ahy13g4552 184 PANTHER CYCLIC DOF FACTOR 2 9 179 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g4552 Ahy-Chr13 145866975 145867951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g4552 9 184 C2C2-Dof Transcription Factor Family AT2G34140 50.847 5.91e-51 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Ahy13g4552 zf-Dof 1.20E-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g4552 - - aip:107634834 369.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g4552 13 145866975 145867951 Ahy3g4300 3 142993091 142993817 hybridization