Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g4359 ATGTTAGACAACACCATCAATACTGCTTCTTGTTCTTCCGATGCCCAAAACCTCCCTAACAAAAGAAAAAGAAGACCCGCTGGAACCCCTGATCCAGATGCAGAAGTGGTGTCTCTGTCACCGAAGACGCTGCTGGAATCGGATCGTTACGTGTGTGAGATCTGCAACCAAGGGTTCCAGAGGGACCAGAACCTGCAAATGCATAGGAGGAGGCACAAGGTGCCATGGAAGCTTCTCAAGAGGCAAGGAGGAGGCGGTACAACCATGATGAAGAAGAAGGTGTTCGTGTGCCCGGAGCCCAGCTGCTTGCACCATGACCCGTGCCACGCACTGGGCGACCTGGTGGGAATCAAGAAACACTTCAGAAGAAAGCACAGCAACCACAAGCAGTGGGTCTGCCATAAGTGCTCCAAGGGTTACGCCGTTCAATCCGATTACAAAGCTCACATCAAAACCTGTGGCACCCGTGGCCATTCCTGTGACTGTGGCCGCGTCTTCTCCAGGGTGGAGAGTTTCATAGAACACCAGGATGCGTGCACTGTGAGGCAGCACCGACCAGAGTTACAAGCACTGCAACCAGCATGCTCTTCAAGAACAGCTTCAAGCACAAGTCCATCCAGTGATGCTAATTTTACGGTGACTGCCCCACTGCAACCACTTCCACCACCACCACCACCACTGCCACCACCTTCAGAGATTCACAGGAACAATACTAATACTCACAACTTGGAACTTCAGCTCCTACCTTCTTCAATAAACTCTCGTCAAAACCACGAAACCCGCTTGAGACTCGCAATAGGTGGGGACAATGGGAGGAGTGTTGAAGAAGAACGGAACAATAACAATAATGTAATGATGGTGGGTGATTCTTCTTCCACATTGGAAGTGGCAAGGTTGAAGGAGTGTGCAGGACAGGAGCTGAAGTTGGCAATGGCGGAAAAGGCATATGCAGAAGAGGCAAGGAGAGAAGCGAAACGGCAGATTGAGATAGCTGAGCTTGAGTTTGAGAATGCAAAGAGGATAAGGAAGCAAGCACAAGCTGAGCTTGGAAAGGCTGAAGCTTTGAGAAAGCAAGCCATCAAGAAGATGACTTCAACTCTCATGGAGATAACATGCCATGCTTGCAAGCAAAACTTTCACTCTTCCAACAATGGCGTTGGGGTTCCGTCTGAAGAGACCTCCATTGTAATGAGTTACATGTCATCAGCAAACAACACGGATGATGGTGAAGCAGAATAG 1239 0.4956 MLDNTINTASCSSDAQNLPNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRQGGGGTTMMKKKVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCHKCSKGYAVQSDYKAHIKTCGTRGHSCDCGRVFSRVESFIEHQDACTVRQHRPELQALQPACSSRTASSTSPSSDANFTVTAPLQPLPPPPPPLPPPSEIHRNNTNTHNLELQLLPSSINSRQNHETRLRLAIGGDNGRSVEEERNNNNNVMMVGDSSSTLEVARLKECAGQELKLAMAEKAYAEEARREAKRQIEIAELEFENAKRIRKQAQAELGKAEALRKQAIKKMTSTLMEITCHACKQNFHSSNNGVGVPSEETSIVMSYMSSANNTDDGEAE* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g4359 412 MobiDBLite consensus disorder prediction 192 237 - -
Ahy13g4359 412 Pfam Zinc finger, C2H2 type 50 72 IPR013087 -
Ahy13g4359 412 Pfam Zinc finger, C2H2 type 132 152 IPR013087 -
Ahy13g4359 412 MobiDBLite consensus disorder prediction 1 37 - -
Ahy13g4359 412 PANTHER ZINC FINGER PROTEIN SHOOT GRAVITROPISM 5 12 410 - -
Ahy13g4359 412 Gene3D Classic Zinc Finger 40 127 - -
Ahy13g4359 412 MobiDBLite consensus disorder prediction 192 214 - -
Ahy13g4359 412 Coils Coil 307 362 - -
Ahy13g4359 412 PANTHER OS03G0310200 PROTEIN 12 410 IPR039288 GO:0009630
Ahy13g4359 412 ProSiteProfiles Zinc finger C2H2 type domain profile. 50 72 IPR013087 -
Ahy13g4359 412 ProSitePatterns Zinc finger C2H2 type domain signature. 52 72 IPR013087 -
Ahy13g4359 412 MobiDBLite consensus disorder prediction 216 232 - -
Ahy13g4359 412 SMART c2h2final6 131 158 IPR013087 -
Ahy13g4359 412 SMART c2h2final6 50 72 IPR013087 -
Ahy13g4359 412 SMART c2h2final6 95 125 IPR013087 -
Ahy13g4359 412 MobiDBLite consensus disorder prediction 1 17 - -
Ahy13g4359 412 SUPERFAMILY beta-beta-alpha zinc fingers 47 73 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g4359 Ahy-Chr13 143285862 143288135 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g4359 21 412 C2H2 Transcription Factor Family AT2G01940 58.293 3.43e-150 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy13g4359 zf-C2H2 0.0038 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g4359 13 143285862 143288135 Ahy13g4359 13 143285862 143288135 ECH
Ahy13g4359 13 143285862 143288135 Ahy3g4084 3 140319604 140321930 hybridization