Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g4312 ATGGGCAAATCGGCTCTTTGGCTCACCACATTCACCCTCGTGTTGACGGGCTTCCTGACGGCCCGGGCTCAGCCAGAGGCAAACTTCAAGTGCAGCAGCAGCACGAACGCCACGTGTCGAGCTCTAATCGACTACTTTAGCCAGAATGCGACCACGCTCCGAGACATCCAGAAGCTGTTCAACGTGAAGCACCTCCCGGACCTATTGGGCGCAAATGCCAACACGATCCCGGAAAACGCGTCAGGCAGTTACAGCGTGGCGCCCAAGCAGGTAGTTAGGATTCCGTTTCCGTGCAAGTGCAGTAACGGAACGGGGCTGTCGAACCACGTGCCGTTGTACAAAATCAAGCCTGGTGATGGCTTGGACTACATAGCAAGGACAGTGTTCGCGGGCGTGGTGACGTTTCAGCAGATCCAGAAGGCTAATAATATCTCTGACCCCAATAAGATCATCGCTGGGGATTCCATTTGGATACCGTTGCCTTGTAGCTGTGATAGTGTTGGAGGGAGCAGTGTGGTGCACTATGCTTACATAGTTCCACTTGGAAGCTCCGTGGAGGGGATTGCACAGGAGTTTGGTACCACTGAACAGATCATTCTTAGTCTCAACGGTATTGATGACCCTAAGAAGCTTCAGGCTCAGCAGGTTATCGATGTCCCTCTCAAAGCTTGTTCCACAAGTGTTAAAAACAATTCCATGGACTACCCTCTGCTGGTTTCAAACTCCACTTACGTCTACACTGCCAACGAATGCGTAAAATGCAAATGCGACTCCAGCAACAACTATGTATTGCAATGCGAGCCATCGCAGCTTAAACCAACAGGGGGAAAGTGGTCGGTATGCCCCTCCATGAAATGCACAGGGAACCTGACAATTGGCAACTTGACATCTGCTTCAGATGATCCATGCACCGCACCTTCTGTGCCTATGCGGGTTATAGCTCCAAAAGAATCAATACCATTCTTGCTAATGAGTCCACTTGTCCTGCACCGGCACCTGCACCCAGTGGCGGTTCAGTAG 1020 0.5147 MGKSALWLTTFTLVLTGFLTARAQPEANFKCSSSTNATCRALIDYFSQNATTLRDIQKLFNVKHLPDLLGANANTIPENASGSYSVAPKQVVRIPFPCKCSNGTGLSNHVPLYKIKPGDGLDYIARTVFAGVVTFQQIQKANNISDPNKIIAGDSIWIPLPCSCDSVGGSSVVHYAYIVPLGSSVEGIAQEFGTTEQIILSLNGIDDPKKLQAQQVIDVPLKACSTSVKNNSMDYPLLVSNSTYVYTANECVKCKCDSSNNYVLQCEPSQLKPTGGKWSVCPSMKCTGNLTIGNLTSASDDPCTAPSVPMRVIAPKESIPFLLMSPLVLHRHLHPVAVQ* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g4312 339 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 22 309 - -
Ahy13g4312 339 CDD LysM 113 158 IPR018392 -
Ahy13g4312 339 ProSiteProfiles LysM domain profile. 111 158 IPR018392 -
Ahy13g4312 339 Gene3D LysM domain 112 167 IPR036779 -
Ahy13g4312 339 Gene3D LysM domain 169 233 IPR036779 -
Ahy13g4312 339 SUPERFAMILY LysM domain 112 160 IPR036779 -
Ahy13g4312 339 SMART LysM_2 112 159 IPR018392 -
Ahy13g4312 339 SMART LysM_2 176 220 IPR018392 -
Ahy13g4312 339 CDD LysM 177 219 IPR018392 -
Ahy13g4312 339 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 22 309 - -
Ahy13g4312 339 ProSiteProfiles LysM domain profile. 175 219 IPR018392 -
Ahy13g4312 339 Pfam LysM domain 113 159 IPR018392 -
Ahy13g4312 339 Pfam LysM domain 177 220 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g4312 Ahy-Chr13 142721884 142724762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g4312 1 290 LysM Receptor-like Protein (LYPs) Gene Family AT2G17120 50.000 2.46e-92 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g4312 - - gmx:100804190 373.629
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g4312 13 142721884 142724762 Ahy3g4041 3 139779936 139782574 hybridization