Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g3852 ATGTCGGAAGTTAAGGACCCGGCGATAAAGCTTTTTGGGAGGACGATTCAGCTGCCACTGATCCCCAATGACCCTTCTCCACCACCACCACCACCACCACCTCCTCCTCCTCCTCCTCCTCCTCCTCCATCTTCTTCTTCTCCACCAACTGAAGTTGAAGTGAGTTCTGTATCACAACCAGAAACAGAGTCTTTATTGTTTAAGGAACCATCAAAGAGAGAACTAACCTCAACACAAGATAAAGAAACCACAGAGGATTTGAAATCTCCCACAACAACATCTTCAGGCATATTTGAGAACCCAAAGACTCCCACAAATGGTGGAGAACAGAGTGAGACCAGTGTTTCACAAGAAAAAACTCCCAAGAAACCGGACAAGATACTTCCGTGTCCGCGATGCAACAGCATGGACACCAAATTCTGCTACTACAACAATTACAACGTCAATCAGCCGCGTCATTTCTGCAAGAACTGTCAGAGATACTGGACTGCCGGAGGAACAATGAGGAACGTGCCGGTAGGCGCTGGTCGCCGAAAGAACAAAAACTCTGCTGCATCGCATTATCGCCAGATAATGGTCCCGGAGGCGCTTCAAGCAGCTCACCATGGACTACACAATGCTGTCTTGACCTTTGGCCCAGATTCTCCTCTTTGTGATTCCATGTCCTCTGTCTTGAACATTGCGGAAAAAGCCACAAATGGTGTTGTAAACGGGTTTCATGCACCGGAGGCAGCAACTACTTTTGTTTCCTATGGTAGGGATGATGATGGGAATGATCACTCAGTTGGAGTTTCTGGTACAACTTCAACTTCATCAGAGAGGAGAGGCCATGCCAGCTCTCATGAATCGGCGGATAAAAGAGTCGAAAGTTTCCCTCCTCAACTAACTTACTTCCCAAGTAATTCTCCATGGCCGTATCCATGGAATTCGCCAATGCCTCCTCCTCCCACATTTTGCCCTCCAGGCTATCCTATGTCGATATACACCACCCCTTCATACTGGGCATGGAATGTGCCATGCATCTCACCCCAATCTCCGGCCCCTGGTTCCGGCCCAAATTCGCCGTTGGGGAAACACTCAAGGGATGGTAACATCATAACCCCGGCCAATTCGCAAAAGGAAAAGCCTAACACAGAAAGCAATAATGTGTTGATCCCCAAGACACTTAGAATTGATGATCCTAGTGAAGCTGCAAAGAGTTCAATATGGTCAACACTAGGAATCAAGAATGAGAAGGCCAACTCTCTCAATGGAGGAGGCCTCTTCAAGGCGTTCCCTTCCAAGGGTAACGACAAGAGTCACGTGGTCGAGGCGTCGCCGATGCTGCACGCCAACCCTGCCGCCCTGACGCGGTCTCTCACCTTCCACGAGCGGACCTAG 1380 0.492 MSEVKDPAIKLFGRTIQLPLIPNDPSPPPPPPPPPPPPPPPPPSSSSPPTEVEVSSVSQPETESLLFKEPSKRELTSTQDKETTEDLKSPTTTSSGIFENPKTPTNGGEQSETSVSQEKTPKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSAASHYRQIMVPEALQAAHHGLHNAVLTFGPDSPLCDSMSSVLNIAEKATNGVVNGFHAPEAATTFVSYGRDDDGNDHSVGVSGTTSTSSERRGHASSHESADKRVESFPPQLTYFPSNSPWPYPWNSPMPPPPTFCPPGYPMSIYTTPSYWAWNVPCISPQSPAPGSGPNSPLGKHSRDGNIITPANSQKEKPNTESNNVLIPKTLRIDDPSEAAKSSIWSTLGIKNEKANSLNGGGLFKAFPSKGNDKSHVVEASPMLHANPAALTRSLTFHERT* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g3852 459 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 1 459 - -
Ahy13g3852 459 SUPERFAMILY Formin homology 2 domain (FH2 domain) 32 406 - -
Ahy13g3852 459 Pfam Dof domain, zinc finger 125 182 IPR003851 GO:0003677|GO:0006355
Ahy13g3852 459 MobiDBLite consensus disorder prediction 14 127 - -
Ahy13g3852 459 MobiDBLite consensus disorder prediction 21 48 - -
Ahy13g3852 459 ProSitePatterns Zinc finger Dof-type signature. 130 166 IPR003851 GO:0003677|GO:0006355
Ahy13g3852 459 MobiDBLite consensus disorder prediction 364 379 - -
Ahy13g3852 459 MobiDBLite consensus disorder prediction 250 290 - -
Ahy13g3852 459 MobiDBLite consensus disorder prediction 66 87 - -
Ahy13g3852 459 ProSiteProfiles Zinc finger Dof-type profile. 128 182 IPR003851 GO:0003677|GO:0006355
Ahy13g3852 459 MobiDBLite consensus disorder prediction 88 115 - -
Ahy13g3852 459 MobiDBLite consensus disorder prediction 49 65 - -
Ahy13g3852 459 PANTHER CYCLIC DOF FACTOR 2 1 459 IPR045174 GO:0003700|GO:0006355
Ahy13g3852 459 MobiDBLite consensus disorder prediction 345 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g3852 Ahy-Chr13 137911103 137914821 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g3852 1 458 C2C2-Dof Transcription Factor Family AT3G47500 43.648 5.21e-88 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Ahy13g3852 zf-Dof 2.80E-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g3852 - - gmx:100813315 509.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3852 13 137911103 137914821 Ahy13g3852 13 137911103 137914821 ECH
Ahy13g3852 13 137911103 137914821 Ahy11g1915 11 124626618 124630049 ECH
Ahy13g3852 13 137911103 137914821 Ahy13g0009 13 121970 124345 ECH
Ahy13g3852 13 137911103 137914821 Ahy3g3582 3 135046083 135049713 hybridization