Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g3356 ATGTTGGTTAATATCATGGCTCCATCAACGACTAACGAATGGACACAGACTCAAATGATAGATGATCAAGATCACAAGACCAAAGCTGAAGCTCCATCATCATCATCTGCTAGGGTTATGGAAAAACAAGGTCAAGAACATGTTCAGCAGCAGCAGCAGCAGCAGCAACAAGCTCTCAAGTGCCCTCGCTGCGATTCATCCAACACCAAATTCTGCTACTACAACAACTACAGCTTATCGCAGCCCAGACACTTCTGCAAAGCCTGCAAGCGATACTGGACAAGAGGTGGAACCCTCCGCAACGTCCCCGTCGGCGGTGGCTGCAGAAAGAACACCAAGCGTCTCAAGCGCCAATCATCTTCTTCCATCGATGCCACTCCTTCTCCTTCTTCTTCTTCCACTCATCCTCCAACTTCTAATATCAACCCTTTGTTTTATGGGGTACCAAGTAGTAGTAATAATAATAGCAACTGTGATTTGTTGAACCTACCTTCTTTCCCTGGGTTCAGAGTGAGTTCTGGGTATGATAATGATGTTCAGCCTCACCTAAGTGGGTTAGGTTTTTCATCAGGGATCATGTCCAATATTGAAGCTACTGGATTTGGTTCAAATGAGAGTAACTCCTTTCTTTCGGCTTACAATTCCATCTTCGGTTCGTGTTCTTCATCAGCTTCTACTACCTTGCTGAGTTCCACTCTACTGCAGCATAAATTCATGAATGGTGGTGGATTCCAAGGGCTAGCTACTCCTGAGGTTGAGGGAGAAAGAGGAGGAGTCATGGGTTGTTCTTCTTTGAAAGAAGTGAAAGGTGAATTATTGGGAGAAGAGAGAGGGAGAGAGAGGTTGGAGTGGCAGAATCAGATGATGGAACATACGATGGGCTATTCTGATCCCTCTTCTTCGCTTTATTGGAGCACATCATCATCACCCATGGCTGCTTCTTCTTGGAATGATCAACCCAATATTGGTCCTTCTGTCACTTCACTCATCTAG 993 0.4532 MLVNIMAPSTTNEWTQTQMIDDQDHKTKAEAPSSSSARVMEKQGQEHVQQQQQQQQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNTKRLKRQSSSSIDATPSPSSSSTHPPTSNINPLFYGVPSSSNNNSNCDLLNLPSFPGFRVSSGYDNDVQPHLSGLGFSSGIMSNIEATGFGSNESNSFLSAYNSIFGSCSSSASTTLLSSTLLQHKFMNGGGFQGLATPEVEGERGGVMGCSSLKEVKGELLGEERGRERLEWQNQMMEHTMGYSDPSSSLYWSTSSSPMAASSWNDQPNIGPSVTSLI* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g3356 330 MobiDBLite consensus disorder prediction 118 146 - -
Ahy13g3356 330 MobiDBLite consensus disorder prediction 32 54 - -
Ahy13g3356 330 ProSitePatterns Zinc finger Dof-type signature. 61 97 IPR003851 GO:0003677|GO:0006355
Ahy13g3356 330 Pfam Dof domain, zinc finger 57 113 IPR003851 GO:0003677|GO:0006355
Ahy13g3356 330 MobiDBLite consensus disorder prediction 103 146 - -
Ahy13g3356 330 ProSiteProfiles Zinc finger Dof-type profile. 59 113 IPR003851 GO:0003677|GO:0006355
Ahy13g3356 330 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-LIKE 7 312 - -
Ahy13g3356 330 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 7 312 IPR045174 GO:0003700|GO:0006355
Ahy13g3356 330 MobiDBLite consensus disorder prediction 24 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g3356 Ahy-Chr13 130667215 130670397 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g3356 54 201 C2C2-Dof Transcription Factor Family AT5G65590 48.485 1.18e-35 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Ahy13g3356 zf-Dof 7.10E-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g3356 - - aip:107631218 555.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3356 13 130667215 130670397 Ahy13g3356 13 130667215 130670397 ECH
Ahy13g3356 13 130667215 130670397 Ahy3g3089 3 128248989 128251818 hybridization
Ahy13g3356 13 130667215 130670397 Ahy20g0433 20 4399252 4400835 PCT
Ahy13g3356 13 130667215 130670397 Ahy10g0254 10 2300967 2302266 PCT
Ahy20g0433 20 4399252 4400835 Ahy13g3356 13 130667215 130670397 PCT
Ahy10g0254 10 2300967 2302266 Ahy13g3356 13 130667215 130670397 PCT