Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g3355 ATGGAGAAAGAAGGAGAGGTCAGTAAAGAGCAAGTTGCTGGGCCTCTGCCTCCACCTCCACCTCCGCCTCGACCGCCACCACAGCATAAATGCCCACGGTGTGATTCAGACAACACCAAGTTCTGCTATTACAACAACTACAGCCTGTCACAGCCTCGATACTTGTGCAAAGCATGTAAGAGGTACTGGACACAAGGTGGAACCCTCAGGAATATTCCTCTTGGTGCTTCCAAGAACAAGATCAAGAACAAGCCCAACAAGCGTACCTTCAACACTGCTACTACTACTTCTTCTTCCTCCTCCGGCAAACTCTATTATCAGCATCATGCTGCTGGTTCTACTGCATCATCATTATCATCGTCAGCAGCAGCATCATCAGGGAGCAGCATGGCAGAATATACAACTGCTGCTGCTTCTCACCTTCATCATCAATGGCCCTCTCATGCCAACTACTCTTTCTGGAGTACTACTGTCTGCACCACTTCTTCCATAAGCGCTAATAATAATAATAACAACTCTTCTCAGTCACAGACCAATATCATGCCAAGAACAGCAGCTTCTTCTTCTCCTTCTTTCATCACACCAAATCAATGGCCACATCTCAAATGGAACCACCCTATGCCTCCTCCATGA 633 0.4708 MEKEGEVSKEQVAGPLPPPPPPPRPPPQHKCPRCDSDNTKFCYYNNYSLSQPRYLCKACKRYWTQGGTLRNIPLGASKNKIKNKPNKRTFNTATTTSSSSSGKLYYQHHAAGSTASSLSSSAAASSGSSMAEYTTAAASHLHHQWPSHANYSFWSTTVCTTSSISANNNNNNSSQSQTNIMPRTAASSSPSFITPNQWPHLKWNHPMPPP* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g3355 210 MobiDBLite consensus disorder prediction 86 101 - -
Ahy13g3355 210 Pfam Dof domain, zinc finger 28 83 IPR003851 GO:0003677|GO:0006355
Ahy13g3355 210 ProSitePatterns Zinc finger Dof-type signature. 31 67 IPR003851 GO:0003677|GO:0006355
Ahy13g3355 210 ProSiteProfiles Zinc finger Dof-type profile. 29 83 IPR003851 GO:0003677|GO:0006355
Ahy13g3355 210 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 26 178 - -
Ahy13g3355 210 MobiDBLite consensus disorder prediction 167 191 - -
Ahy13g3355 210 MobiDBLite consensus disorder prediction 1 31 - -
Ahy13g3355 210 MobiDBLite consensus disorder prediction 13 29 - -
Ahy13g3355 210 MobiDBLite consensus disorder prediction 73 101 - -
Ahy13g3355 210 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 26 178 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g3355 Ahy-Chr13 130621306 130621938 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g3355 24 80 C2C2-Dof Transcription Factor Family AT4G21050 75.439 2.72e-28 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Ahy13g3355 zf-Dof 1.70E-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g3355 - - aip:107634681 371.318