Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g3310 ATGGGTTTGAGTTCCAAGCAGGTTTCAAGGAGTAGTAGTGGACTTGATTGGAACCAAGCCTTATTGGAATCACAGAACTTGGAGCTTCCAATTCCAAAGCCTCATCATATCATGAAGAAACAACAACAGAATAATCAATCATCGTCATCATCATCAGAGCCAATGAAGTGTCCAAGATGTGAATCTACCAACACAAAGTTCTGTTACTACAACAATTACAACAAGTCTCAGCCTCGCTATTTATGTAGAACTTGCAAGAGGCACTGGACCAAAGGTGGAACTTTGCGCAATGTTCCAGTTGGTGGTGGAAGAAAGAACAAAAGGGTAAAAAAGTCAACTGCCACTGCAACCGCCACAGCCACCGCCACCACCTCTACTTGCACCACAAGCATCAGAATTCAAGCTCCTTCTCTTGCAATGGATGATCACAAAAACATAGCTTCTCCTTCTCCTTCTTCCTCTTCTTCCCTCTATCAAGGTCTGATTCGTCCACCACCTTTCCTACTACATCAGAATCTGATGAATAATATTATTACCAGAGGCATAACATCAGAAAGTAAAGGTTATGGTATTGGTAATAATAACAATAATACCAATGGCATCTTTCTTGGTTCATCAGCTTTGTCTCTTCCTCAGAATCAAGGCTTGCTTTTCCCCTTCTCAACTGCATCAAGCTCTAATTTTGACACAAACCCATGTTTAGTTTCAGTTTCAACCTCTTTGCAATCCACCAATGTTTATAATAACTGTGGTGGTGAAGAGTTTAAAGCAATAGAGGAACCAAGCATGCACAGCATAATGGCTACCACTACTTCTACACAACCATGGGAGATACCAGCAGCAACAATGGAAATGTCAAACTATTGGGGTTGGGAGGACATTGATTCTTTGGTCTCTACTGATCCGAACAACAATCATCCTTGGGATGATTCTGATATCAAACCCTGA 948 0.4135 MGLSSKQVSRSSSGLDWNQALLESQNLELPIPKPHHIMKKQQQNNQSSSSSSEPMKCPRCESTNTKFCYYNNYNKSQPRYLCRTCKRHWTKGGTLRNVPVGGGRKNKRVKKSTATATATATATTSTCTTSIRIQAPSLAMDDHKNIASPSPSSSSSLYQGLIRPPPFLLHQNLMNNIITRGITSESKGYGIGNNNNNTNGIFLGSSALSLPQNQGLLFPFSTASSSNFDTNPCLVSVSTSLQSTNVYNNCGGEEFKAIEEPSMHSIMATTTSTQPWEIPAATMEMSNYWGWEDIDSLVSTDPNNNHPWDDSDIKP* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g3310 315 MobiDBLite consensus disorder prediction 96 117 - -
Ahy13g3310 315 MobiDBLite consensus disorder prediction 37 57 - -
Ahy13g3310 315 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 40 204 IPR045174 GO:0003700|GO:0006355
Ahy13g3310 315 ProSitePatterns Zinc finger Dof-type signature. 57 93 IPR003851 GO:0003677|GO:0006355
Ahy13g3310 315 Pfam Dof domain, zinc finger 54 107 IPR003851 GO:0003677|GO:0006355
Ahy13g3310 315 MobiDBLite consensus disorder prediction 38 57 - -
Ahy13g3310 315 ProSiteProfiles Zinc finger Dof-type profile. 55 109 IPR003851 GO:0003677|GO:0006355
Ahy13g3310 315 PANTHER OS06G0284500 PROTEIN 40 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g3310 Ahy-Chr13 130076229 130078155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g3310 55 119 C2C2-Dof Transcription Factor Family AT5G60200 68.182 2.77e-28 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Ahy13g3310 zf-Dof 7.40E-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g3310 - - gmx:100791855 305.834
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g3310 13 130076229 130078155 Ahy3g3043 3 127504861 127506851 hybridization
Ahy13g3310 13 130076229 130078155 Ahy20g0485 20 4934903 4936681 PCT
Ahy13g3310 13 130076229 130078155 Ahy10g0302 10 2721840 2723611 PCT
Ahy20g0485 20 4934903 4936681 Ahy13g3310 13 130076229 130078155 PCT
Ahy10g0302 10 2721840 2723611 Ahy13g3310 13 130076229 130078155 PCT