Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g2096 ATGATGAGAAACAATGTGCTGCAGCAGCAGCAGTTCAAAGATTCAGCTCTTAAGATGATCTCATTGTGCTCCCTAATTATTGTAGGTGTAGTTGAAACAAAATCAACAATAGAACCATGCAACTCCTCCCAGGCATGCCCCTCACTTCTCTCATACCTCTTGCCATGGGACTCAATGCTATCCGAAATAGCAACACGCTTCAACGTGAACGTCTCTGATATCATGGCCGCAAACTCTGCCTTCCCAATAACAGCATCGTGCGGCAACGAAATCGTGAGAGCAGGATCAACGGTGAAGATACCAGCCACGTGTGAGTGCGTGGATGGAATCAGAAGGTCGGTGTCAGCAGTGTACAAGGTGAAAGCATCGGACACACTGGAATCGATATCAGAGGGTTATGGAGGACTTGTTAGTGCAGATCAAATTGGGAGTTTCAACAAAGCCGTGCCTTTGGTGGATGGAGATGTGGTAGTTATACCGTTGCCGTGCAGTTGCATGAAGAACCAGAATAATGGGGAAAGTGCGGTTTATATGTCGTATGTGGTTCAGAAAGGGGAGACACTGGGAAGCGTGGCGGCTTATTTTGGTACAACTATTTCTGATTTGGAAACTGTTAACGGTCTTGGACAACCTACCGTTCTACCTGGCGATATTCTATCGATTCCTATACCAGCATGTTCATCAGCTACCCTGAATTGGTACAATGAGAGTTTAATAGTTCCAAATGGCTCATATGCTTTAACTGCCACCAACTGTATTAAATGCACTTGTGCTCCACAGGGTCTCAAGATGCAATGTTTTCCTTCTGGAATGGATGTACATTGCTATAATTTACGTTGCAAGGGTTCCAATCTTGCTATTGGGGATGAACATCTGGAATATTCCAATGCTGGATGCAATGTCACCCAATGTGTGTACCGTGGCCACAGGGGTGGAAAAATTCTGAGTAGTCTGATAAACTCTTCTTATCTGCAATGTCCGGATAATAAAAACTCTAGTGCAGCTACATGTTGGCAACCCTCAGCACCAAATTTGGCAGACCCATTTGTTTTGTCTCCAAGCCCAAGCCCAAGCCTATTCCCCTTGCCCGTTTCTGAGGCTGCTCTAATGACTCATGCCTATGACTATGACTACGACTATGAGAGAAGGCTCCATCTGTTCTCATTCATCTGTCGTATGCTACACTTGTTCTTCCCAATGCTTCTACTTTGTTTTTTAATCTGA 1224 0.4485 MMRNNVLQQQQFKDSALKMISLCSLIIVGVVETKSTIEPCNSSQACPSLLSYLLPWDSMLSEIATRFNVNVSDIMAANSAFPITASCGNEIVRAGSTVKIPATCECVDGIRRSVSAVYKVKASDTLESISEGYGGLVSADQIGSFNKAVPLVDGDVVVIPLPCSCMKNQNNGESAVYMSYVVQKGETLGSVAAYFGTTISDLETVNGLGQPTVLPGDILSIPIPACSSATLNWYNESLIVPNGSYALTATNCIKCTCAPQGLKMQCFPSGMDVHCYNLRCKGSNLAIGDEHLEYSNAGCNVTQCVYRGHRGGKILSSLINSSYLQCPDNKNSSAATCWQPSAPNLADPFVLSPSPSPSLFPLPVSEAALMTHAYDYDYDYERRLHLFSFICRMLHLFFPMLLLCFLI* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g2096 407 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 16 399 - -
Ahy13g2096 407 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 1 16 399 - -
Ahy13g2096 407 CDD LysM 55 100 IPR018392 -
Ahy13g2096 407 CDD LysM 179 221 IPR018392 -
Ahy13g2096 407 Pfam LysM domain 180 222 IPR018392 -
Ahy13g2096 407 Pfam LysM domain 60 101 IPR018392 -
Ahy13g2096 407 Pfam LysM domain 118 148 IPR018392 -
Ahy13g2096 407 Gene3D LysM domain 163 232 IPR036779 -
Ahy13g2096 407 SMART LysM_2 117 160 IPR018392 -
Ahy13g2096 407 SMART LysM_2 60 101 IPR018392 -
Ahy13g2096 407 SMART LysM_2 179 222 IPR018392 -
Ahy13g2096 407 SUPERFAMILY LysM domain 178 223 IPR036779 -
Ahy13g2096 407 ProSiteProfiles LysM domain profile. 178 221 IPR018392 -
Ahy13g2096 407 CDD LysM 117 159 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g2096 Ahy-Chr13 38656848 38658916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy13g2096 34 359 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 42.730 1.27e-75 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy13g2096 - - gmx:100819382 480.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2096 13 38656848 38658916 Ahy3g1801 3 36433958 36435880 hybridization