Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy13g1133 ATGTCTTTATTACTAAGGCTATTTATCTCACTTTACATTACCCTTGCTTCATTAGGCTTATGTTTTAGCTATTATATAGAGGAACCATTTCATCACACAAATGTTGAACCATACATTGTTCATCATGATGGGAGATTTATCAAGAGAAAACATGAACACTTTGGCCTAATGATGAGAGCTAATAGAGCTAAAAACCTTCATTTTTCAAGGTCAAGTGGAACAATTAGTGTTAATGACTTTGGAGCCAGAGCTGATGGAAGTGACGACAGTCGGGCATTTGAAAAGGCTTGGAATGAAGCATGTTCTAGTGGGGTCACCCTTGTGGTGCCTGAAAGAAGGACCTACACTCTTAAGCCAATAAGATTTTCAGGTCCATGCAGACCCAACACTGCATTCATGATATATGGAACAATTAAGGCATGGCCAGAGATGTCAGCATATGAAGATGATAGAAAACATTGGATTGTGTTTGATAGTGTCAACAACTTCAGAGTTGATGGTGGTGGCACTTTCAATGGCAATGGCAAAAAATGGTGGCAGAATTCATGCAAAACTAATGATAACCTTCCATGCAAAGATGCACCAACTGCTGTGACATTTTACCAATGCAAGAATTTGAGAGTGGCAAATGTGAGATTGAAAGATGCACAACAAATGCATGTGGCATTTGAGAGTTGCTTCAATGTTATAGTTTCCAATGTTCTTGTTAGAGCACCAGGATATAGTCCCAACACTGATGGAATTCATGTTGCTGAAACACAAAACATTGTTATAAGCGACAGTGACATTGGAACAGGTGATGATTGTATTTCAATAGTAAGTGGATCTCAAAATGTTAGAGCTACAGATATCACATGTGGACCAGGACATGGAATCAGCATTGGAAGCTTAGGAGCTGATAACTCTGAAGCTGTAGTGTCCAATGTGGTTGTGAACAGAGCCACCTTAACAGGAACAAGTAATGGAGTTAGAATCAAGACATGGCAGGGAGGTTCTGGTTATGCAAGGAACATAAAGTTTTTGAACATAGTGATGCAAAATGTGACAAATCCCATAATCATAGATCAAAACTACTGTGATCAAGAAAAGCCATGCCATGAGCAGAAGTCAGGAGTTCAACTAAGCAATGTGCTTTACCAAAACATCAGAGGAACAAGTGCTTCAGAAGTGGCTATAAAATTTGATTGCAGCAGAACAGTGCCATGCAGAGAAATCTACCTTGAGGATGTGATATTAGAAGCAGAAGATGGTGGCAATGGCGACACGGTTGCCACGTGTCAGAATGTAAGATATGTGAACCGAGGAAAGTTTTTCCCTCAATGCACTCCAATGAGAAATAATCAAAGGGGAGGAAGATTTTAA 1362 0.3957 MSLLLRLFISLYITLASLGLCFSYYIEEPFHHTNVEPYIVHHDGRFIKRKHEHFGLMMRANRAKNLHFSRSSGTISVNDFGARADGSDDSRAFEKAWNEACSSGVTLVVPERRTYTLKPIRFSGPCRPNTAFMIYGTIKAWPEMSAYEDDRKHWIVFDSVNNFRVDGGGTFNGNGKKWWQNSCKTNDNLPCKDAPTAVTFYQCKNLRVANVRLKDAQQMHVAFESCFNVIVSNVLVRAPGYSPNTDGIHVAETQNIVISDSDIGTGDDCISIVSGSQNVRATDITCGPGHGISIGSLGADNSEAVVSNVVVNRATLTGTSNGVRIKTWQGGSGYARNIKFLNIVMQNVTNPIIIDQNYCDQEKPCHEQKSGVQLSNVLYQNIRGTSASEVAIKFDCSRTVPCREIYLEDVILEAEDGGNGDTVATCQNVRYVNRGKFFPQCTPMRNNQRGGRF* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy13g1133 453 PANTHER POLYGALACTURONASE 7 442 - -
Ahy13g1133 453 Pfam Glycosyl hydrolases family 28 105 430 IPR000743 GO:0004650|GO:0005975
Ahy13g1133 453 Gene3D - 59 447 IPR012334 -
Ahy13g1133 453 SMART pbh1 335 356 IPR006626 -
Ahy13g1133 453 SMART pbh1 253 274 IPR006626 -
Ahy13g1133 453 SMART pbh1 306 327 IPR006626 -
Ahy13g1133 453 SMART pbh1 226 252 IPR006626 -
Ahy13g1133 453 SUPERFAMILY Pectin lyase-like 71 443 IPR011050 -
Ahy13g1133 453 ProSitePatterns Polygalacturonase active site. 283 296 IPR000743 GO:0004650|GO:0005975
Ahy13g1133 453 PANTHER - 7 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy13g1133 Ahy-Chr13 12740889 12744533 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g1133 13 12740889 12744533 Ahy18g2140 18 115258603 115264506 PCT
Ahy13g1133 13 12740889 12744533 Ahy8g2060 8 41194701 41199943 PCT