Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g1750 ATGGTTTTCACTTCAATTCCAGCAGCTTATCTTGAAGCAGCAGCCAACTGGCAGCAGCATCAACAGCAACAACAAAATCATCAACCTAGTGGCAACTCTGGTGGTTCTACATCTCCTCAGCTTCTTCCACCGCCACCTCCTCCGCCACCACAACCTCAACCTCATGGAGCAGGAGGAGGAGCCGGCTCCATCAGGCCAGGCTCGATGGCGGATAGGGCAAGGATGGCGAACCTCCCCATGCCCGAGGCTTCACTAAGGTGTCCAAGATGCGAATCAACCAACACAAAGTTTTGCTACTTCAACAATTATAGCCTCTCTCAGCCCCGCCATTTCTGCAAGACCTGTAGAAGGTACTGGACAAGAGGCGGGGCCTTGAGAAACGTCCCCGTCGGCGGAGGATGCAGAAGAAACAAAAGAAGCAAAGGAGGCGGCGGAGGAACTTCCAGATCCCCCGCCGCAAGCTCGGACCGCCAGACGGGGAGTGCCAGCTCAACAAACTCCGTTTCCTCAAACTCAACCGGTGACATAGTGGGCCTCGGCCCATCTATGCCACCATTAAGATTTATGGCTCCATTGCATCATCATCAACTCACAGATTTTGCAACCGGTTCTGGTACAGACATACCCCTAAACTATAACCTAATGAACTATACCTCGATTTCCGGATCAATGGGAGCCGTAGGTTTAGGTGACTTGAGTTTCCAAATAGGAAACCCTTTAGCTGCCGCCTCCGGTGGCAGCGGAGGAGGAGCAAGTGGTGGCTCTTCTCTCTTATCTGGATTAGAACAATGGAGGATTCCACAACAGTTTCCATTCATGGCTGGTTTGGAAGGTTCTTCACATGGTGGTGGTAACAATAATGGTGGTGGATTATTATACCCTTTTGAAGGAAGTGCTGAGATAAGTGGTTATGTGAGGCCAAAGGTTTCAACTTCTATGGTGTTAACACAATTGGCTTCGGTGAAAATGGAAGATTCTAGAGAACTTAATAATGTTTCTTCTGGACAGTTCTTGATGGGAAGCATTGGCAACAATAACAACAACACCACCACCAGCAACAACAATGTTCCAACACATGAACAATATTGGAATGGTGCTACTGGAACTTCTGCTTCAGCTTCTTGGACTGAACTTTCTGGTTTTAGTTCTTCTTCCACTACAAGCAATAACCAACTATAG 1179 0.4843 MVFTSIPAAYLEAAANWQQHQQQQQNHQPSGNSGGSTSPQLLPPPPPPPPQPQPHGAGGGAGSIRPGSMADRARMANLPMPEASLRCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSKGGGGGTSRSPAASSDRQTGSASSTNSVSSNSTGDIVGLGPSMPPLRFMAPLHHHQLTDFATGSGTDIPLNYNLMNYTSISGSMGAVGLGDLSFQIGNPLAAASGGSGGGASGGSSLLSGLEQWRIPQQFPFMAGLEGSSHGGGNNNGGGLLYPFEGSAEISGYVRPKVSTSMVLTQLASVKMEDSRELNNVSSGQFLMGSIGNNNNNTTTSNNNVPTHEQYWNGATGTSASASWTELSGFSSSSTTSNNQL* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g1750 392 MobiDBLite consensus disorder prediction 342 367 - -
Ahy12g1750 392 ProSitePatterns Zinc finger Dof-type signature. 87 123 IPR003851 GO:0003677|GO:0006355
Ahy12g1750 392 Pfam Dof domain, zinc finger 84 139 IPR003851 GO:0003677|GO:0006355
Ahy12g1750 392 MobiDBLite consensus disorder prediction 16 38 - -
Ahy12g1750 392 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 20 387 IPR045174 GO:0003700|GO:0006355
Ahy12g1750 392 MobiDBLite consensus disorder prediction 143 176 - -
Ahy12g1750 392 MobiDBLite consensus disorder prediction 39 55 - -
Ahy12g1750 392 MobiDBLite consensus disorder prediction 126 176 - -
Ahy12g1750 392 ProSiteProfiles Zinc finger Dof-type profile. 85 139 IPR003851 GO:0003677|GO:0006355
Ahy12g1750 392 MobiDBLite consensus disorder prediction 16 68 - -
Ahy12g1750 392 PANTHER DOF ZINC FINGER PROTEIN DOF3.6 20 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g1750 Ahy-Chr12 94704755 94706754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g1750 1 325 C2C2-Dof Transcription Factor Family AT2G37590 42.773 9.17e-57 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Ahy12g1750 zf-Dof 6.20E-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g1750 - - aip:107628427 596.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g1750 12 94704755 94706754 Ahy12g1750 12 94704755 94706754 ECH
Ahy12g1750 12 94704755 94706754 Ahy2g1496 2 79591475 79593584 hybridization
Ahy4g1404 4 69177822 69179542 Ahy12g1750 12 94704755 94706754 PCT
Ahy12g1750 12 94704755 94706754 Ahy4g1404 4 69177822 69179542 PCT