Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy11g1000 ATGGCCATGTCTAGAAGAGAAATGGATCGAATCAAAGGCCCGTGGAGCCCGGAAGAAGATGAGGCCCTGCAGAGGCTGGTGGAGAGGCACGGACCCAGGAACTGGACGTTGATAAGCAAGTACATCCCGGGCCGCTCCGGGAAGTCCTGCAGGCTAAGATGGTGTAACCAACTTTCACCTCAGGTTGAGCACCGGGGCTTCACGCCCGATGAGGATGAGACGATAATCCGGGCCCATGCCCGGTTCGGTAACAAGTGGGCTACAATAGCCCGACTCCTGTCTGGTCGAACCGACAACGCGGTAAAGAATCACTGGAACTCAACACTCAAGCGCAAGTGCTCATCCATGATGATCGACGAGCCTGCAACAGGTCCGGCGGACTTTGACGGCGGTTACTACCTACGGCCCGCGAAGAGGTCTGCGAGCGCAGGTGCTACGATGCCGCTATCCACCGGACTTCACATGAGCCCGACGTCGCCGGGAAGCCCGTCGGGATCCGACGCGAGTGATTGCAGCGTTCGCGCTGTCTCTCCGTCTAACGTTCTGAGGCCCGTGCCCAGGACCGTTGTTCCTCCGATCGAAACTGCGTCCTCTTCAGAGGACCCTCCGACGTCGTTGTCGCTGTCTCTGCCTGGCGTAGACGTTGCTGTGGAAGTCTCCAATCGTGTCACGGAATCTATGTCACGTGCCTTTTCTCCGGCGATGGTGATGGCTTCGGCGGCGCCTTCAACGGCTGTAACGGCAGCGGATCCGCTGCCATTGCCATCGCCACAACATCAAGTGGTAGCGCCGTTTAATTTTAGCGCGGAGCTGATGGCGGTGATGCAAGAAATGATAAGAAAAGAAGTGAGGAGTTACATGGAACAGCGCAATGGGATGTGTTTTCAGGCTGCTGGTGGGTTTAGGAACGTTTCGGTAAATCGAGTTGGGATTAGCAAAGTCAACTCGTGA 951 0.5678 MAMSRREMDRIKGPWSPEEDEALQRLVERHGPRNWTLISKYIPGRSGKSCRLRWCNQLSPQVEHRGFTPDEDETIIRAHARFGNKWATIARLLSGRTDNAVKNHWNSTLKRKCSSMMIDEPATGPADFDGGYYLRPAKRSASAGATMPLSTGLHMSPTSPGSPSGSDASDCSVRAVSPSNVLRPVPRTVVPPIETASSSEDPPTSLSLSLPGVDVAVEVSNRVTESMSRAFSPAMVMASAAPSTAVTAADPLPLPSPQHQVVAPFNFSAELMAVMQEMIRKEVRSYMEQRNGMCFQAAGGFRNVSVNRVGISKVNS* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy11g1000 316 SMART sant 11 60 IPR001005 -
Ahy11g1000 316 SMART sant 63 111 IPR001005 -
Ahy11g1000 316 CDD SANT 67 109 IPR001005 -
Ahy11g1000 316 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Ahy11g1000 316 SUPERFAMILY Homeodomain-like 9 105 IPR009057 -
Ahy11g1000 316 CDD SANT 14 56 IPR001005 -
Ahy11g1000 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 62 IPR017930 -
Ahy11g1000 316 PANTHER MYB PROTEIN-RELATED 2 234 - -
Ahy11g1000 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 113 IPR017930 -
Ahy11g1000 316 Pfam Myb-like DNA-binding domain 12 58 IPR001005 -
Ahy11g1000 316 Pfam Myb-like DNA-binding domain 67 108 IPR001005 -
Ahy11g1000 316 ProSiteProfiles Myb-like domain profile. 7 58 IPR001005 -
Ahy11g1000 316 MobiDBLite consensus disorder prediction 147 174 - -
Ahy11g1000 316 PANTHER TRANSCRIPTION FACTOR MYB44-LIKE 2 234 - -
Ahy11g1000 316 Gene3D - 65 124 - -
Ahy11g1000 316 Gene3D - 11 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy11g1000 Ahy-Chr11 22159091 22160604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy11g1000 4 314 MYB Transcription Factor Family AT4G37260 51.057 1.83e-97 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ahy11g1000 Myb_DNA-binding 1.10E-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g0605 15 7659974 7661658 Ahy11g1000 11 22159091 22160604 ECH
Ahy16g3485 16 152207431 152208538 Ahy11g1000 11 22159091 22160604 ECH
Ahy11g1000 11 22159091 22160604 Ahy11g1000 11 22159091 22160604 ECH
Ahy11g1000 11 22159091 22160604 Ahy1g1000 1 17414505 17416121 hybridization
Ahy11g1000 11 22159091 22160604 Ahy5g0602 5 7682308 7684070 PCT