Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g2592 ATGAGTATGCTAGGCCTCACAGACTTGGTTTTCATAGCTCCAAATCCTTCTTCTCTTCACCACCATCGCCAACAACAACTGATTTCAACGGAAAACGACAACAACAACAGCAACAACAATCCTCTGAGCGTTGGTTTCGGCATTTTTCCACTCTTAGCAGCCACGCCCTGCGTTCAGGTAGTTCAGAATCAGAGCAATGAGGAGGCGATGGAAGATTCTGGAAAGAAGAAGAAGAAGATCGAAGAAGATGAAAATGGCGGTGAATTTAGGGTTTGTACGGACTGTGGAAACAGAGCGAAGAAAGATTGCGTGTACAGACGGTGCAGGAGTTGTTGCAAGGGGCGTGGATATGACTGTACCACTCACGTGAGGAGCACGTGGGTGCCTGCTCTAAAACGCCGCGAGCGCCACGTGGCGGTGACTGGTGGTGTTGGTGGAGAAGCTGCTAATAAGAAGACAAAGAACAATAATGGATGCGCGAGTGGAAGTGCTACCTCTCATTCTCATACTTCCACCAACTCTGATTCCTGTTATTCTCATCAAGATGCTAGGTTCAAAGAATCATTACCAGGTCATGTTCGTGCACCTGCTGTGTTCAGATGCCATAGAGTCTCAACTGTTGGAAATGGTGAAAATGAATTTGCATATTTAGCAACGGTTCATATAAGTGGCCATGTATTCAGGGGATTTCTCTATGACCATGGTGTTGATCCCAAAAATACAATAATGCCCTCCTATGCTTCAGAACTTCAACTTGGAAACAACTGCATTAGTAATGGGAAGAACAAGGAATGTTCTTCTTCTGCAATTGGGGTTACAACCAATGAATATGATAATCTCTATTCTGCTTCTGCTGCTAGCTAG 864 0.4502 MSMLGLTDLVFIAPNPSSLHHHRQQQLISTENDNNNSNNNPLSVGFGIFPLLAATPCVQVVQNQSNEEAMEDSGKKKKKIEEDENGGEFRVCTDCGNRAKKDCVYRRCRSCCKGRGYDCTTHVRSTWVPALKRRERHVAVTGGVGGEAANKKTKNNNGCASGSATSHSHTSTNSDSCYSHQDARFKESLPGHVRAPAVFRCHRVSTVGNGENEFAYLATVHISGHVFRGFLYDHGVDPKNTIMPSYASELQLGNNCISNGKNKECSSSAIGVTTNEYDNLYSASAAS* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g2592 287 PANTHER LRP1 CARBOXY-TERMINAL DOMAIN PROTEIN 67 278 - -
Ahy10g2592 287 PANTHER LRP1 CARBOXY-TERMINAL DOMAIN PROTEIN 2 60 - -
Ahy10g2592 287 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 67 278 IPR007818 GO:0003700|GO:0006355
Ahy10g2592 287 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 2 60 IPR007818 GO:0003700|GO:0006355
Ahy10g2592 287 Pfam Domain of unknown function (DUF702) 91 237 - -
Ahy10g2592 287 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 189 236 IPR006511 -
Ahy10g2592 287 MobiDBLite consensus disorder prediction 145 173 - -
Ahy10g2592 287 MobiDBLite consensus disorder prediction 150 173 - -
Ahy10g2592 287 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 91 133 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g2592 Ahy-Chr10 115422220 115426120 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Ahy10g2592 DUF702 2.70E-52 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g3153 20 142198279 142201883 Ahy10g2592 10 115422220 115426120 hybridization