Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g2556 ATGAAGAAGAAGCTAGACACCCGTTTTCCTGCGGCTCGGATAAAGAAGATAATGCAAACAGATGAAGATGTTGGAAAGATAGCTCTAGCAGTCCCTGTTCTAGTGTCTAAAGCTTTAGAGCTATTTTTGCAAGATCTTTGTAACCGAACTTATTCAATAACTCTCCAAAGAGGAGCAAAAACCATGACTTCACTGCATTTAAAACATTGTGTACAAAGCTATAATGTTTTTGACTTCTTGAGAGACATTGTTAGCAAGGTTCCTGACTATGGCCATGGCCATGGCCATGGTCATTCTCATTCTGAAGGTGGGGTAGATGATCGTACCCTTCCAAAGAGAAGGAAAGCTGGTGGTGATGATTGTAATGACAGTGATGAAGAGGCTAAGAGGAGTAAGATGTATGAGTTAGGCCACAGTGGTGGCACTGGTAGAGGAAGAGGCCGAGGCAGAGGACGAGGTCGTGGTAGAGGGGCTCGAACTGCTGAAAGAGAGGCCCATCATCATCAGCAAGTTGAATCTGAGCCTTGCTCCTCAGTTCAGCACCCTAGCAAAGACATTCCAAATACTGGCATGTCACTAGACAATTCTCCAGAATCCAAGGAGGTTCCAAAAGAGAACACTGCATGTCATGAGGAAAATAATCAATCTCTGCGTAACATTGATCTAAATGCTAACTTAAATGAGAGCGAGGAGAAGAATACAAGCATGGAAGCTCCGGCCTCGTTGCCTCCAGCCACTTTGCCGCCATCCAGTCTGCCTGAACTGGCAACAGAGATAAATCACGAGGAAATCCCTGGCTGGTCCCTTTCTGATGCGGACAAGATGGCCATTGACACTATGCAGCTTGCAAATCTCGGTAGTCGGATAGATGATGATGAGGATTATGATGAGGAAGGGTGA 900 0.4544 MKKKLDTRFPAARIKKIMQTDEDVGKIALAVPVLVSKALELFLQDLCNRTYSITLQRGAKTMTSLHLKHCVQSYNVFDFLRDIVSKVPDYGHGHGHGHSHSEGGVDDRTLPKRRKAGGDDCNDSDEEAKRSKMYELGHSGGTGRGRGRGRGRGRGRGARTAEREAHHHQQVESEPCSSVQHPSKDIPNTGMSLDNSPESKEVPKENTACHEENNQSLRNIDLNANLNESEEKNTSMEAPASLPPATLPPSSLPELATEINHEEIPGWSLSDADKMAIDTMQLANLGSRIDDDEDYDEEG* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g2556 299 SUPERFAMILY Histone-fold 3 90 IPR009072 GO:0046982
Ahy10g2556 299 MobiDBLite consensus disorder prediction 209 240 - -
Ahy10g2556 299 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 298 - -
Ahy10g2556 299 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Ahy10g2556 299 MobiDBLite consensus disorder prediction 91 134 - -
Ahy10g2556 299 MobiDBLite consensus disorder prediction 91 252 - -
Ahy10g2556 299 PANTHER HISTONE SUPERFAMILY PROTEIN 1 298 - -
Ahy10g2556 299 MobiDBLite consensus disorder prediction 172 196 - -
Ahy10g2556 299 MobiDBLite consensus disorder prediction 155 171 - -
Ahy10g2556 299 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g2556 Ahy-Chr10 115069555 115076898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g2556 1 289 CCAAT-HAP5 Transcription Factor Family AT3G12480 48.515 6.59e-77 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Ahy10g2556 CBFD_NFYB_HMF 1.20E-18 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g3117 20 141820403 141826861 Ahy10g2556 10 115069555 115076898 hybridization