Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g0254 ATGGAGAGAGCAGAGCAACAGCAGAAGGAGAAAGGAGGAGTAAAGTGCCCTAGATGTGATTCATCAAACACCAAGTTTTGTTACTACAACAACTACAGCCTGTCACAGCCAAGGCACTTCTGCAAAGCCTGCAAGAGATACTGGACAAGAGGTGGAACCCTCAGAAACGTTCCTGTTGGCGGCGGTTGCAGAAAGAACAAGCGTCGTCTCAACCACCCACACCCAAACACTACCTCTTCTCAGATCAACACCAACAATCATGATGTCAATCTCCCCTCCTTATTCCACACCTTCACTTCTCATGCTGCTCTTCAAAATAATCATGCCTTTGCTGCTTCTTCTTCAAGCTATGATTCTATCTTGTTACCTCCTGCTTCTACAACTATGATGCCGATGCAGCAAAACGTCATCAATGGTGGTTATTATTGCCAAAACCAGATGGAGCAGCAGCCTCATGTGCCTAATTTCTCTGATCCAAATTCTCTTTATTATTGGAGTAATGCTTTCACTTCTTGGAACAACGATAATAATCATCCTCTTACTTCTCTCATCTAA 555 0.4378 MERAEQQQKEKGGVKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRRLNHPHPNTTSSQINTNNHDVNLPSLFHTFTSHAALQNNHAFAASSSSYDSILLPPASTTMMPMQQNVINGGYYCQNQMEQQPHVPNFSDPNSLYYWSNAFTSWNNDNNHPLTSLI* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g0254 184 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 4 147 IPR045174 GO:0003700|GO:0006355
Ahy10g0254 184 MobiDBLite consensus disorder prediction 59 85 - -
Ahy10g0254 184 Pfam Dof domain, zinc finger 14 68 IPR003851 GO:0003677|GO:0006355
Ahy10g0254 184 ProSitePatterns Zinc finger Dof-type signature. 16 52 IPR003851 GO:0003677|GO:0006355
Ahy10g0254 184 ProSiteProfiles Zinc finger Dof-type profile. 14 68 IPR003851 GO:0003677|GO:0006355
Ahy10g0254 184 PANTHER DOF ZINC FINGER PROTEIN DOF2.4-LIKE 4 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g0254 Ahy-Chr10 2300967 2302266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g0254 14 68 C2C2-Dof Transcription Factor Family AT1G28310 94.545 2.34e-33 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Ahy10g0254 zf-Dof 5.10E-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g0254 - - adu:107468324 402.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g0433 20 4399252 4400835 Ahy10g0254 10 2300967 2302266 hybridization
Ahy13g3356 13 130667215 130670397 Ahy10g0254 10 2300967 2302266 PCT
Ahy3g3089 3 128248989 128251818 Ahy10g0254 10 2300967 2302266 PCT
Ahy10g0254 10 2300967 2302266 Ahy13g3356 13 130667215 130670397 PCT
Ahy10g0254 10 2300967 2302266 Ahy3g3089 3 128248989 128251818 PCT