Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev09g2560 ATGCCCTCCACTACTACTACTACTCTTGTTCTTGTTCTTTCTTCCCTGCAACCGCAACCGCAACCTTGGTCCATTCCCAAAACCCTCAAACCGTCGATTCAACTCGCTTCTTTCGCCATGAAGGACCGCCCCACGCTGTCCTCCTATGGCGCCATTTACGTTCCGCCGCACCACCGCCTCCGCTCCGTCGTCACCTCCGCCAATTACACCTCCTCCGCTTCCGTCGCCGCCAAGCTCCGCGAACACCACGATGCTGTTATAAACCCTAGACCCGCTGCTGCGCCTGCTACTACTACTACTACTCTGCCTCACTCGCCAATGCCGTCGCCAGAGCAAATTCCGAATAAGGCGAATTCGCGCTTCGTTTCTGCTTACGATGACGGTGTTTCCGAGGAAGGTTCCGATCGTGAATTCGATGCTACGTCGCTACAGAGTGCTTCCCCCAATGATAACACTGACGAGTGGAAGAGGAAACTAAGACTGCTATTGAATGACAAGAGTAAGCAAGAATTGGTCTCGAGGGAGAAAAAGGATAGGCGTGATTTCGATCAAATAGCACTTCTGGCTAGCAGAATGGGGCTGTATAGCCATATGTATGCAAAGGTTGTTGTCTTCAGCAGGGTCCCACTTCCAAACTATAGATATGATTTGGATGATCGGCGGCCACAGAGGGAGGTGAGAGTGCCTATTTCCTTGTTAAGGCGAGTTGAGAAGTATTTTGAAGAACACCTTACTCAAAAGTCCAAGGTGAAGGAAAGCTTTTCAGATTTGTCATTTGCAAGATCAAGCAGTAACAGTAGCATTGCTACAGATGAAGGGCTTTTTGAGCACCCTGAGCCATTAGCATCCAGTAAGGCTGTTGTGGAGAAAATTCTCCGACGAAAGAGCTTGCAAATGCGTGATCAGCAGCAATCTTGGCAGGAATCTGGTGAAGGAAGAAGAATGCTAGAATTTCGTAGCAGCCTTCCTGCTTATAAAGAGAAAGAACACATATTATCAGTCATATCAAGAAATCAGGTAGTTATCATTTCTGGTGAAACAGGTTGTGGCAAGACAACTCAAATACCACAATTCATTTTAGAATCTGAGATAGACTCTGTTCGTGGAGCTTCTTGTAATATTATATGCACACAGCCAAGGCGTATTTCAGCTATGTCTGTTTCTGAAAGGGTTGCCTATGAGAGAGGGGAGAAATTGGGCGAATCTGTTGGATATAAAGTTCGACTGGAGGGTATGAAAGGGAAAGATACCCATCTTCTCTTTTGCACCACAGGCATTTTATTAAGAAGATTACTAGCTGATAGAAACTTAACAGGTGTAACTCATGTTATTGTGGATGAAATTCATGAACGTGGGATGAATGAAGATTTTCTGCTTATTGTCCTTAAGGATCTCCTTCCCCACCGACCAGAACTGAAACTGATTTTGATGAGTGCTACCCTAGATGCAGAGCTCTTCTCTTCTTACTTCAATGGGGCTCCAGTTATCAAAATTCCGGGCTTCACATACCCCGTTAGAACTCATTTTTTGGAGAACATTCTCGAGATGACGGGCTACAAATTGACTCCTTATAATCAAATTGATGATTATGGTCAAGAAAGGATGTGGAAAATGAACAAGCAGGCCCCAAGAAAGAGAAAAAGCCAAATTGCTTCTGCTGTAGAGGATGCTGTTAGATCTGCTGATTTCAAAGATTACAGCTCACAGACACAGGAGTCTCTGTCATGTTGGAATCCTGACTGTATTGGTTTTAGTCTCATAGAATATATCTTATGCAATATATGTGAGAATGAAAAGCCTGGTGCTGTTTTGGTTTTTATGACGGGATGGGATGATATAAGTTCTTTGAAAGAGAAGTTCCTTGCACACCCTGTCTTGGGAGATCCAAACCAAGTTTTGTTGCTTACATGTCATGGCTCAATGGCTAGTTCAGAACAGAGGTTAATATTTGAAGAGCCCAAAGATGGAGTAAGGAAAATAGTGCTAGCAACAAATATTGCTGAAACAAGTATCACTGTTAATGATGTTGTTTTTGTTCTTGACTGCGGAAAGGCAAAAGAAACATCATATGATGCACTGAATAACACACCCTGTTTGCTTCCTACATGGATCTCTAAGGTTTCTGCTCAACAAAGAAGAGGAAGAGCTGGTCGTGTTCAGCCAGGAGAGTGTTACCATCTCTATCCTAGATGTGTATATGATGCTTTTGCAGAGTATCAATTGCCAGAAATTTTGAGGACACCCTTGCAATCTCTGTGTTTGCAAATCAAAAGTCTTAGACTTGGAAGTATATCTGAGTTCTTGTCTAGGGCTTTGCAGTCTCCTGAGATCCTTGCGGTGCAAAATGCTGTTGAATATTTGAAAATAATTGGTGCTTTAGATGAGAATGAGAATCTGACTATATTAGGACGTTACCTGACAATGCTTCCAATGGAACCCAAACTTGGCAAGATGCTTATATTAGGTGCTATTTTCAATTGCCTGGATCCGATATTAACTGTTGTTGCTGGCCTTAGTGTGAGAGATCCTTTCCTAACACCACTGGACAAAAAAGATCTTGCAGAGGCAGCAAAATCTCAATTTTCTGGGGCGTTCAGTGACCACCTTGCACTTGTAAGGGCTTATGAGGGTTGGAAAGATGCTGAAAAAGACCTGGGTGGATATGAATATTGCTGGAAAAATTTTCTTTCTGCACAGTCAATGAAAGCTATTGATGCTCTAAGGAGAGAGTTCAGGTGCCTGCTCAAGGATATTGGATTGGTTGATAGCAACACAGCCAGCTTTAATGCATGGGGCAATGATGTAAATCTTATGCGGGCGATCATTTGCTATGGACTATATCCTGGAATTAGCTCTGTTGTGCATAATGAGAAGTCATTCTTTCTGAAAACAATGGAGGATGGTCAAGTGCTCCTGTATTCGAACTCGGTGAATGCTCGGGAAACTAGAATTCCATATCCGTGGTTACTTTTTAATGAGAAGATAAAAGTGAACTCAGTTTTCCTCCGTGACTCAACAGCTGTGTCTGATTCAGTTCTGCTTCTATTTGGTGGAAGCTTATTGCAAGGAGATGCTGATGGTCACTTAAAAATGTTAGGAGGATATCTGGAGTTTTTTATGGATCCTGCCGTAGCTGACATGTACCAGAGTATAAAGAGAGAACTTGATGATCTCATTCAGAGCAAACTACTTTTTCCAAGGATGAGCATACACTTGTATCATGAACTCCTGTCAGCAGTACGGTTGCTGATTTCCATTGACACATGTGAAGGCAGATTTGTTTTTGGTCACCGGGTCTTTAAACCATCAAAACCAATGGTAATGGCCTCACATCCACCATTGGTTTCAAGGACAGAGAGTGGACCTGGGGGTGATAATTCTAAAAGTCAGCTCCAAACCTTGGTTACAAGAGCAGGATATGCTGCACCAGTCTACAAGACTAAACAATTGAAGAACAATCAATTTCGGGCTACGGTTGAATTCAATGGAATGGAGATCATGGGTCAACCATGTAACAATAAGAAGAGTGCAGAAAAAGACGCTGCAGCCGAGGCATTGCAATGGCTGATGGGTGGGAGGCAGACAGGCACTAATGGATCCAAAGATAAGATGACTGTTGTTGCCCTAAACCTTGTGGTTAACACTCCCTTCTCTTCTGGGATAGAGGACAGAGTTTTTGGCAGCGGCATTGTTACCATATATTCAATTTTGTTCATCAAAACAGCCAACCAACAAATACCCAACGAGCAAGACATTGCCAATCAGCGAGGAAACAGAAGGCAACTGACAGAATCATTTTATAACAAGATGTAG 3813 0.4309 MPSTTTTTLVLVLSSLQPQPQPWSIPKTLKPSIQLASFAMKDRPTLSSYGAIYVPPHHRLRSVVTSANYTSSASVAAKLREHHDAVINPRPAAAPATTTTTLPHSPMPSPEQIPNKANSRFVSAYDDGVSEEGSDREFDATSLQSASPNDNTDEWKRKLRLLLNDKSKQELVSREKKDRRDFDQIALLASRMGLYSHMYAKVVVFSRVPLPNYRYDLDDRRPQREVRVPISLLRRVEKYFEEHLTQKSKVKESFSDLSFARSSSNSSIATDEGLFEHPEPLASSKAVVEKILRRKSLQMRDQQQSWQESGEGRRMLEFRSSLPAYKEKEHILSVISRNQVVIISGETGCGKTTQIPQFILESEIDSVRGASCNIICTQPRRISAMSVSERVAYERGEKLGESVGYKVRLEGMKGKDTHLLFCTTGILLRRLLADRNLTGVTHVIVDEIHERGMNEDFLLIVLKDLLPHRPELKLILMSATLDAELFSSYFNGAPVIKIPGFTYPVRTHFLENILEMTGYKLTPYNQIDDYGQERMWKMNKQAPRKRKSQIASAVEDAVRSADFKDYSSQTQESLSCWNPDCIGFSLIEYILCNICENEKPGAVLVFMTGWDDISSLKEKFLAHPVLGDPNQVLLLTCHGSMASSEQRLIFEEPKDGVRKIVLATNIAETSITVNDVVFVLDCGKAKETSYDALNNTPCLLPTWISKVSAQQRRGRAGRVQPGECYHLYPRCVYDAFAEYQLPEILRTPLQSLCLQIKSLRLGSISEFLSRALQSPEILAVQNAVEYLKIIGALDENENLTILGRYLTMLPMEPKLGKMLILGAIFNCLDPILTVVAGLSVRDPFLTPLDKKDLAEAAKSQFSGAFSDHLALVRAYEGWKDAEKDLGGYEYCWKNFLSAQSMKAIDALRREFRCLLKDIGLVDSNTASFNAWGNDVNLMRAIICYGLYPGISSVVHNEKSFFLKTMEDGQVLLYSNSVNARETRIPYPWLLFNEKIKVNSVFLRDSTAVSDSVLLLFGGSLLQGDADGHLKMLGGYLEFFMDPAVADMYQSIKRELDDLIQSKLLFPRMSIHLYHELLSAVRLLISIDTCEGRFVFGHRVFKPSKPMVMASHPPLVSRTESGPGGDNSKSQLQTLVTRAGYAAPVYKTKQLKNNQFRATVEFNGMEIMGQPCNNKKSAEKDAAAEALQWLMGGRQTGTNGSKDKMTVVALNLVVNTPFSSGIEDRVFGSGIVTIYSILFIKTANQQIPNEQDIANQRGNRRQLTESFYNKM* 1271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev09g2560 1270 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 939 1019 IPR011709 -
Aev09g2560 1270 SMART ha2_5 782 872 IPR007502 GO:0004386
Aev09g2560 1270 MobiDBLite consensus disorder prediction 93 117 - -
Aev09g2560 1270 Gene3D - 280 500 IPR027417 -
Aev09g2560 1270 CDD DEXHc_RHA-like 338 498 - -
Aev09g2560 1270 MobiDBLite consensus disorder prediction 86 117 - -
Aev09g2560 1270 SMART helicmild6 611 720 IPR001650 -
Aev09g2560 1270 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1126 1191 IPR014720 -
Aev09g2560 1270 SMART DRBM_3 1127 1190 IPR014720 -
Aev09g2560 1270 CDD SF2_C_RHA 564 728 - -
Aev09g2560 1270 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 109 1141 - -
Aev09g2560 1270 SUPERFAMILY dsRNA-binding domain-like 1121 1189 - -
Aev09g2560 1270 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 332 499 IPR014001 -
Aev09g2560 1270 Pfam DEAD/DEAH box helicase 330 482 IPR011545 GO:0003676|GO:0005524
Aev09g2560 1270 Pfam Helicase associated domain (HA2) 783 856 IPR007502 GO:0004386
Aev09g2560 1270 Pfam Double-stranded RNA binding motif 1127 1189 IPR014720 -
Aev09g2560 1270 Gene3D - 1110 1194 - -
Aev09g2560 1270 PANTHER ATP-DEPENDENT RNA HELICASE 109 1141 - -
Aev09g2560 1270 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 586 760 IPR001650 -
Aev09g2560 1270 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 326 895 IPR027417 -
Aev09g2560 1270 Gene3D - 762 865 - -
Aev09g2560 1270 MobiDBLite consensus disorder prediction 129 152 - -
Aev09g2560 1270 SMART ultradead3 320 513 IPR014001 -
Aev09g2560 1270 Pfam Helicase conserved C-terminal domain 588 719 IPR001650 -
Aev09g2560 1270 Gene3D - 585 739 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev09g2560 Aev-Chr9 27018434 27026233 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev09g2560 09 27018434 27026233 Aev09g2560 09 27018434 27026233 ECH