Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g0397 ATGGCTCTGGAAGCTCTGAAATCACCCACAACCGCCGCCCCTTCCTTCACCTTCGAGGAATCCAATATCGGGTATTTAGAGGCACCCTGGGCCAAGAGAAAGCGTTCAAAGCGTTCCCGCATGGATCCTGCTCACCCTTCATGCTCTGAGGAAGAGTACCTCGCTCTCTGCCTCATCATGCTTGCTCGCGGCACCACCGGCACCGCCACTAACGCTCTCCCTGCCACCGCCAAGCCTCACTCCTCTCCTGCTCCATCAGTTCAAGAGTCAGCGGTTCAACCCACCGCCGCAGATCCTTCCCCTGCCGCTAATCTCACTCACAAGTGCTCTGTTTGCAACAAAGCTTTCTCCTCTTACCAGGCACTCGGTGGACACAAGGCCAGCCACCGCAAACTCGCCGCCGCCACCGCCGGAGACGACCACCACTCCACCTCCTCCGCCGTCACCACCAGCTCTGCTGCATCCAACGGCGGAGGTAAGCTCCATGAGTGCTCCATCTGCCACAAGTCATTCCCCACGGGCCAGGCCCTGGGAGGGCACAAGCGTTGCCACTACGATGGCGGCGCCTCCGCCTCCGCCGCTGCAGGTGGTGGCAGTGGCATCACGGCATCTGAAGGGGTAGGGTCCAGCCACAGCCACCAACGCGACTTCGATCTCAACCTCCCTGCTTTTCCGGACTTCTCCAACAAGTTCTTCGCGGAAGACGAGGTTTCCAGCCCTCTGCCCGTAAAGAAGCCCCGTCTGCTGACCCTGCCCAAGATTGAAATCCCTCAATTCTAA 780 0.5987 MALEALKSPTTAAPSFTFEESNIGYLEAPWAKRKRSKRSRMDPAHPSCSEEEYLALCLIMLARGTTGTATNALPATAKPHSSPAPSVQESAVQPTAADPSPAANLTHKCSVCNKAFSSYQALGGHKASHRKLAAATAGDDHHSTSSAVTTSSAASNGGGKLHECSICHKSFPTGQALGGHKRCHYDGGASASAAAGGGSGITASEGVGSSHSHQRDFDLNLPAFPDFSNKFFAEDEVSSPLPVKKPRLLTLPKIEIPQF* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g0397 259 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 251 IPR044653 GO:0003700
Aev08g0397 259 ProSitePatterns Zinc finger C2H2 type domain signature. 109 129 IPR013087 -
Aev08g0397 259 Pfam C2H2-type zinc finger 162 186 - -
Aev08g0397 259 Pfam C2H2-type zinc finger 107 131 - -
Aev08g0397 259 MobiDBLite consensus disorder prediction 133 157 - -
Aev08g0397 259 ProSiteProfiles Zinc finger C2H2 type domain profile. 162 184 IPR013087 -
Aev08g0397 259 MobiDBLite consensus disorder prediction 139 157 - -
Aev08g0397 259 ProSiteProfiles Zinc finger C2H2 type domain profile. 107 129 IPR013087 -
Aev08g0397 259 PANTHER ZINC FINGER PROTEIN ZAT10 1 251 - -
Aev08g0397 259 ProSitePatterns Zinc finger C2H2 type domain signature. 164 184 IPR013087 -
Aev08g0397 259 SUPERFAMILY beta-beta-alpha zinc fingers 107 184 IPR036236 -
Aev08g0397 259 MobiDBLite consensus disorder prediction 71 100 - -
Aev08g0397 259 SMART c2h2final6 107 129 IPR013087 -
Aev08g0397 259 SMART c2h2final6 162 184 IPR013087 -
Aev08g0397 259 MobiDBLite consensus disorder prediction 194 214 - -
Aev08g0397 259 Gene3D Classic Zinc Finger 105 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g0397 Aev-Chr8 2196182 2196961 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev08g0397 1 256 C2H2 Transcription Factor Family AT1G27730 46.388 5.17e-60 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aev08g0397 zf-C2H2_6 1.1e-12 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev08g0397 08 2196182 2196961 Aev08g0397 08 2196182 2196961 ECH
Aev07g0901 07 6327983 6328672 Aev08g0397 08 2196182 2196961 PCT