LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aev08g0358	ATGGCTCTTGTGCTGGACAACTGTGAGAGCATATTGCTGTCGCTGGACTCGCACAAATCGGTGCCGGCGCCGTTCCTGACGAAGACGTACCAGCTGGTGGACGATCCCAGCACCGATCACATAGTGTCATGGGGCGAAGACGAGACCACCTTCGTGGTGTGGCGGCCCCCTGAGTTCGCTAGGGACCTTCTCCCCAACTACTTCAAGCACAACAACTTCTCCAGCTTCGTTCGCCAGCTCAACACTTATGGTTTCAGAAAGATTGTGCCGGACAGATGGGAGTTCGCAAATGAATTCTTCAAGAAAGGAGAGAAGCATCTGCTGTGCGAGATCCATAGAAGAAAAACGGCACAGCCTCAGCAAGTAGCCATGAATCACCACCACCACCACTCCCCGCTGGCCATGCCGACCTTCTTTCCCTTCTCAAGCAGCAGACTCAGCATCTCTCCGCCCAATGACTCGGACGACCAGGCCACTTGGTGCGACTCTCCGCCGCCACTCACCGCCTCTCCAAGGGGAGTAGTGGTGAGCACCACCACCACGACCACCTCTTGCTCGGTGACGGCGCTGTCAGAGGACAATGAGAGGCTGAGGAGAAGCAACAGCATGCTGATGTCGGAGCTGGCACACATGAAGAAGCTCTACAACGACATCATCTACTTCGTTCAGAACCATGTGAAGCCAGTGCCTCCAAGCAACGCCACCACTCACTCTTCTTCTTCTTCTGCTTCCTCCTCCTTGCTTCTTTGCAATAGTAATAACACAACGCAACAAGCTAGTAATAACAACATGATGAATACTTTTGGCACTAGCAACGCTGTTTCAATGGTGCAAAGGGCAATGAACCAGCAGCAGCAGCAGCAGCAGCTTTTGGGGTACTATTCAAGTAGTAACCCTCCTACAAAGCAAGTATTAGGCTCTTGTTCTCAACATCACCACCACCTGATGATGCCACAAGCACATAATAATAATAATAATAATCATCATGGTGTTGTGAGTAATAACTACTCTCAATCTCCAAGGAGCTCGGTGACGATTGTAGAAGGGCCAAGCAGCAACGCCAACAGCTGCAAGACCAAGCTTTTTGGGGTCTCATTGCAGTCCAAGAAGAGGGTGCACCCAGAGTACGGATCTAATAATCTTGTTCATTCCGAGACTAACAAGCCTCGTTTGGTTTTGGAAAAAGATGATCTTGGCTTGAACCTCATGCCTCCTTCCACTTGTTAG	1227	0.5069	MALVLDNCESILLSLDSHKSVPAPFLTKTYQLVDDPSTDHIVSWGEDETTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTAQPQQVAMNHHHHHSPLAMPTFFPFSSSRLSISPPNDSDDQATWCDSPPPLTASPRGVVVSTTTTTTSCSVTALSEDNERLRRSNSMLMSELAHMKKLYNDIIYFVQNHVKPVPPSNATTHSSSSSASSSLLLCNSNNTTQQASNNNMMNTFGTSNAVSMVQRAMNQQQQQQQLLGYYSSSNPPTKQVLGSCSQHHHHLMMPQAHNNNNNNHHGVVSNNYSQSPRSSVTIVEGPSSNANSCKTKLFGVSLQSKKRVHPEYGSNNLVHSETNKPRLVLEKDDLGLNLMPPSTC*	409

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aev08g0358	408	PANTHER	BNAC06G00310D PROTEIN	330	407	-	-
	Aev08g0358	408	Pfam	HSF-type DNA-binding	25	114	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Aev08g0358	408	SMART	hsfneu3	21	114	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Aev08g0358	408	Gene3D	-	17	116	IPR036388	-
	Aev08g0358	408	PRINTS	Heat shock factor (HSF) domain signature	25	48	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Aev08g0358	408	PRINTS	Heat shock factor (HSF) domain signature	76	88	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Aev08g0358	408	PRINTS	Heat shock factor (HSF) domain signature	63	75	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Aev08g0358	408	SUPERFAMILY	"Winged helix" DNA-binding domain	22	114	IPR036390	-
	Aev08g0358	408	ProSitePatterns	HSF-type DNA-binding domain signature.	64	88	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Aev08g0358	408	MobiDBLite	consensus disorder prediction	327	351	-	-
	Aev08g0358	408	PANTHER	BNAC06G00310D PROTEIN	12	235	-	-
	Aev08g0358	408	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	12	235	IPR027725	-
	Aev08g0358	408	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	330	407	IPR027725	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aev08g0358	Aev-Chr8	1923638	1924987	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aev08g0358	1	407	HSF	AT1G46264	49.766	1.38e-116	342

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Aev08g0358		HSF_DNA-bind	2.9e-32	CL0123

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aev08g0358	08	1923638	1924987	Aev08g0358	08	1923638	1924987	ECH
	Aev07g0858	07	5857609	5859501	Aev08g0358	08	1923638	1924987	PCT