Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g0332 ATGCAATCCAACGGCTCTGATTCGCAGCAACAGCAACCGACGGAGCAGAATCAACAGCAGCAGACGCCGCCGCAGCCAGTGGCAGTGCCGCAGCAGTGGGTGCCGATGCAGTACCCGGCGGCCGCGATGGTAATGCAGCACCCGATGATGCCGCCGCAACACTACGCGGCGCCGCCACCTCAGCCCTACATGCCGTACCACCACCAGTACCAGCACCAGCAGGTGGCGCACGTGGGGCCTCACGTGCATCAGCATGGATCCAGCGCTGACAACAAGACGATCTGGGTCGGCGATTTGCATCATTGGATGGACGAAAATTATCTCCATCGCTGTTTCGCTTCTACCGGCGAGATTTCGTCCATCAAGGTTATTCGCAATAAGCAAACTGGTCTATCAGAGGGTTATGGATTCGTGGAATTCTTTTCACACGGCACAGCTGAGAAAGTCTTACAGAACTATGCTGGAATTTTGATGCCCAACACAGAGCAACCATTCCGCCTGAACTGGGCAACATTCAGCACAGGCGACAAGCGTTCAGATAATGCTCCAGATCTTTCCATTTTTGTAGGAGATTTGGCTGCTGATGTTACAGATAGCATCTTGCACGAAACATTCTCTAGTAGATACCCTTCTGTTAAAGCTGCAAAAGTTGTTTTTGATGCCAACACTGGCCGTTCAAAGGGCTATGGTTTCGTCAGGTTTGGAGATGATAATGAGAGGACTCAGGCCATGACTGAAATGAATGGTGTTTACTGTTCTAGCAGGCCTATGCGTATTGGAGCTGCAACTCCTAGGAAATCTTCTGGCTTTCAACAAGGAGGCCAATCAAATGGCACATCCAGCCAATCCGAAGCTGATTCTACAAACACAACTATATTTGTTGGAGGACTCGACCCTAATGTTACAGCTGAAGAACTTAGGCAACCATTCTGCCAATATGGTGAGATAGTGTCTGTTAAGATACCTGTTGGTAAAGGATGTGGTTTCGTACAATTTGCAAACAGAAATAATGCGGAAGAGGCGTTGCAGAAGCTAAATGGGACAACGATTGGGAAGCAAACAGTTCGTCTTTCTTGGGGCCGCAATCCAGCAAACAAGCAGTTTAGAATGGAATTCGGAAGTCCATGGAATGGGGCGTATTATGGGGGCCCTGTGTATGATGGTTATGGATATGCCTTGCCACCACCTCATGATCCAAGCATATATGCTGCTGCTTATGGTGCTTATCCTCTTTATGGAGGCCACCAGCAACAAGTAAGCTAG 1263 0.4925 MQSNGSDSQQQQPTEQNQQQQTPPQPVAVPQQWVPMQYPAAAMVMQHPMMPPQHYAAPPPQPYMPYHHQYQHQQVAHVGPHVHQHGSSADNKTIWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFFSHGTAEKVLQNYAGILMPNTEQPFRLNWATFSTGDKRSDNAPDLSIFVGDLAADVTDSILHETFSSRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERTQAMTEMNGVYCSSRPMRIGAATPRKSSGFQQGGQSNGTSSQSEADSTNTTIFVGGLDPNVTAEELRQPFCQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGRNPANKQFRMEFGSPWNGAYYGGPVYDGYGYALPPPHDPSIYAAAYGAYPLYGGHQQQVS* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g0332 420 MobiDBLite consensus disorder prediction 262 286 - -
Aev08g0332 420 MobiDBLite consensus disorder prediction 265 286 - -
Aev08g0332 420 Gene3D - 184 260 IPR012677 -
Aev08g0332 420 SUPERFAMILY RNA-binding domain, RBD 184 363 IPR035979 GO:0003676
Aev08g0332 420 SUPERFAMILY RNA-binding domain, RBD 63 173 IPR035979 GO:0003676
Aev08g0332 420 CDD RRM3_NGR1_NAM8_like 289 360 - -
Aev08g0332 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 172 IPR000504 GO:0003723
Aev08g0332 420 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47C-RELATED 26 419 - -
Aev08g0332 420 CDD RRM2_SECp43_like 184 263 - -
Aev08g0332 420 CDD RRM1_SECp43_like 93 173 - -
Aev08g0332 420 Gene3D - 91 171 IPR012677 -
Aev08g0332 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 185 264 IPR000504 GO:0003723
Aev08g0332 420 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 26 419 - -
Aev08g0332 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 292 355 IPR000504 GO:0003723
Aev08g0332 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 187 256 IPR000504 GO:0003723
Aev08g0332 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 161 IPR000504 GO:0003723
Aev08g0332 420 Gene3D - 267 368 IPR012677 -
Aev08g0332 420 MobiDBLite consensus disorder prediction 1 27 - -
Aev08g0332 420 SMART rrm1_1 93 168 IPR000504 GO:0003723
Aev08g0332 420 SMART rrm1_1 186 260 IPR000504 GO:0003723
Aev08g0332 420 SMART rrm1_1 291 358 IPR000504 GO:0003723
Aev08g0332 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 290 362 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g0332 Aev-Chr8 1803965 1806845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev08g0332 63 371 Eukaryotic Initiation Factors Gene Family AT4G34110 26.899 1.30e-30 122
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev08g0332 08 1803965 1806845 Aev08g0332 08 1803965 1806845 ECH
Aev07g0818 07 5534935 5538731 Aev08g0332 08 1803965 1806845 PCT