Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g0248 ATGTCCAACTCCATTACCAATCAAAACCAATTTGAGAGCCAAGATTTAGATGCATATGGGTCTTCTTTGAGAGCCAACAATGCATTCACTGAGTCCCTAGGAGTGTTCCCCAGCATTCAATCCATTGGGCACAGAATGTCAAGACCGGTGGAACTTGTGCAAGCTCCTGTGCTAGCTGAGGGCTCTGCCGAGATGAGCCACACAAGGCATTTGATGGATCTTCTTGGGGCTGCTAATGAGAGCAGTCACCAACCTCAGGGCCTCTCTCTTTCTTTAGGCTCTCACATGATTGTCCCTTCTGACGAATACAGGCATAGTAGATCCTTAATTCCTGGTCTCATGAACCCCAATTACTTCATGCCTGGACAGGATTCAAGGGAAGCTTGTAATCCAGCAGTGGAGCATCTAACCAGTGACTACTTCTTCAACAATGCCACTTTTGCCTCATCTTCTGCTTCGTTGAACCGCTCTCCTTCCACCTCTTACGGGACCGAGTCGTTTGCTGCTCTCATTGGGAACTCAAGATACCTCAAGCCAGTGCAGTCCCTTCTTGAAGATCTTGTTGATGTTGGTGGGAATGTGGTTGATAGAATCAATGAGAAGTATGTGGATAAACTGTTCCATGGAGGCAGAGCAAGTGCCAGGACACTTTCCTCAGAGCTGAAAGCAGAGCTGAGGAACAATGGGCCTTTATTGGCTGAGAAACAAGAGCAACAGATGAAAATTGCAAAGTTGATTGCTCTGTTGGATGAGGTAGAGGGAAGATATGAGAAATACTACCATCAAATGGAAGAAGTGGTGTCATCCTTTGAGATGATAGCAGGTCTTGGAGCTGCAAAGTGTTACACTGCTCTGGCACTCCAAGCCATGTCTAGACATTTCTGCAGCCTGAGAGATGCAATAGTGTCACAAATAAATGTGGAGAAAAGAAAACTCCTGCAGGATTTGCCTAAAATCAGCAGTGGATTATCTCAACTAAGCCTTTTTGATAGGGACACAAGACAGAGTAGAATGTCCCTCCAACAGCTTGGTTTGATCCAAAGCCAACGCCAAGTTTGGAGACCCATCAGAGGATTGCCTGAAACCTCGGTAGCGATTCTCCGGTCTTGGCTCTTCGAGCACTTCCTCCACCCTTATCCTAATGATTCTGAGAAGTTAATGCTGGCATCCCAGACAGGTTTATCTAAAAACCAAGTCTCAAATTGGTTCATAAATGCCAGGGTACGGCTATGGAAACCAATGATAGAAGAAATGTATAAAGAAGAGTTTGGAGACTCTTCAGAAGACTCCAACCCTCCTGCTAACAACTACATGACAAGGGAGGACACTGCAGATTGTGTGGAGGATTGA 1350 0.4578 MSNSITNQNQFESQDLDAYGSSLRANNAFTESLGVFPSIQSIGHRMSRPVELVQAPVLAEGSAEMSHTRHLMDLLGAANESSHQPQGLSLSLGSHMIVPSDEYRHSRSLIPGLMNPNYFMPGQDSREACNPAVEHLTSDYFFNNATFASSSASLNRSPSTSYGTESFAALIGNSRYLKPVQSLLEDLVDVGGNVVDRINEKYVDKLFHGGRASARTLSSELKAELRNNGPLLAEKQEQQMKIAKLIALLDEVEGRYEKYYHQMEEVVSSFEMIAGLGAAKCYTALALQAMSRHFCSLRDAIVSQINVEKRKLLQDLPKISSGLSQLSLFDRDTRQSRMSLQQLGLIQSQRQVWRPIRGLPETSVAILRSWLFEHFLHPYPNDSEKLMLASQTGLSKNQVSNWFINARVRLWKPMIEEMYKEEFGDSSEDSNPPANNYMTREDTADCVED* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g0248 449 Pfam Homeobox KN domain 370 409 IPR008422 GO:0003677|GO:0006355
Aev08g0248 449 SMART prehox3 165 303 IPR006563 -
Aev08g0248 449 Gene3D - 347 428 - -
Aev08g0248 449 CDD homeodomain 353 414 IPR001356 GO:0003677
Aev08g0248 449 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 11 10 431 - -
Aev08g0248 449 MobiDBLite consensus disorder prediction 422 449 - -
Aev08g0248 449 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 10 431 - -
Aev08g0248 449 SMART HOX_1 353 417 IPR001356 GO:0003677
Aev08g0248 449 Coils Coil 235 255 - -
Aev08g0248 449 Pfam Associated with HOX 171 302 IPR006563 -
Aev08g0248 449 SUPERFAMILY Homeodomain-like 359 421 IPR009057 -
Aev08g0248 449 ProSiteProfiles 'Homeobox' domain profile. 372 413 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g0248 Aev-Chr8 1402964 1404619 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Aev08g0248 POX 1.5e-40 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev08g0248 08 1402964 1404619 Aev08g0248 08 1402964 1404619 ECH
Aev08g0248 08 1402964 1404619 Aev07g0722 07 4745535 4748718 PCT