Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g0231 ATGGCTGGGTTCTTCTCTCTAGGTGGAAGGGGAGCTACTACTGCAGGCCCACATAACAAGGAGGAGGAAGAAGAAGAAGAGGATCAAGCAGTAGAAAAACAAGACCACAACAGCAACATCAATAGCAGTAGCCTATTCTTGTTCAGGAACGAGGAGATCTACAACAAGGGGGGGTTCGAGATATGGCCTCAGTCCTACCACCAGAACCAAAGCTTGAGCAACTACTACTCGTTTGGGGTGGGTCCTAGTCGGAGGAACAACAACAACGAGGAAGACGTGTCGTTCTGTGTGTCTGATGACTCAACCAGATTCGGACTGACGGTGATGAGGTCTGGAGGGTCAGCGAGCGGCATGAACTGTCAGGACTGCGGCAACCAAGCCAAGAAAGACTGTTCTCACCTCAGATGCAGGACTTGCTGCAAGAGCCGAGGGTTTCAGTGCCAAACCCACGTCAAGAGCACCTGGGTCCCTGCTGCCAAGCGCCGCGAACGCCAGCAACAACTCGCTGCGCTGCAGCACCAACCATTACGCGGCGACACCGCTTCTAAACGACACAGAGAGAATCAACCTCTCGACGCTCTTGCCTGTGCTCCGCCGCTCCCCGTCACCGCCACCAACACAGGGTTGGAACTGGGACAATTTCCTCCAGAAGTGAGTTCTCCAGCGGTGTTTAGGTGTGTGAAAGTTAGCGCAATAGACACTGCAGATGAACAGTATGCTTATCAAACGGCTGTCAACATCGGAGGGCATGTTTTCAAGGGAATTCTCTACGATCAAGGCCCTCCTCATCATCACCAGGGTCACCCTCAGGCGACTCTTGTTGTTAGAGTTATTGGATAA 840 0.5274 MAGFFSLGGRGATTAGPHNKEEEEEEEDQAVEKQDHNSNINSSSLFLFRNEEIYNKGGFEIWPQSYHQNQSLSNYYSFGVGPSRRNNNNEEDVSFCVSDDSTRFGLTVMRSGGSASGMNCQDCGNQAKKDCSHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQHQPLRGDTASKRHRENQPLDALACAPPLPVTATNTGLELGQFPPEVSSPAVFRCVKVSAIDTADEQYAYQTAVNIGGHVFKGILYDQGPPHHHQGHPQATLVVRVIG* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g0231 279 Coils Coil 19 39 - -
Aev08g0231 279 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 266 IPR007818 GO:0003700|GO:0006355
Aev08g0231 279 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 213 261 IPR006511 -
Aev08g0231 279 MobiDBLite consensus disorder prediction 1 36 - -
Aev08g0231 279 PANTHER PROTEIN SHI RELATED SEQUENCE 7 1 266 - -
Aev08g0231 279 Pfam Domain of unknown function (DUF702) 117 261 - -
Aev08g0231 279 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 119 161 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g0231 Aev-Chr8 1313294 1315097 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Aev08g0231 DUF702 3.9e-65 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev08g0231 08 1313294 1315097 Aev08g0231 08 1313294 1315097 ECH
Aev07g0717 07 4666597 4668471 Aev08g0231 08 1313294 1315097 ECH
Aev08g0231 08 1313294 1315097 Aev04g3386 04 32579346 32580850 ECH
Aev04g3386 04 32579346 32580850 Aev08g0231 08 1313294 1315097 ECH