Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev07g0913 ATGGCATTTGCAGGAACAACTCAGAAGTGTATGGCTTGTGACAAAACTGTTTATCTTGTTGATAAGTTAACTGCAGATAACAGAGTTTACCACAAAGCTTGCTTCAGATGCCACCACTGCAAAGGAACCCTCAAGCTTAGCAACTACAACTCTTTTGAGGGAGTTCTTTACTGCAGACCACACTTTGATCAAATTTTCAAAAGAACTGGGAGCCTTGAGAAAAGCTTTGAAGGGACACCAAAAATTGCTAAACCAGAAAAAATCATTGATAATGAGAAACCTGCAGTGGCAAAAGCCTCTAGTATGTTTGGTGGAACCAGGGATAAATGTGCTGGTTGCCAAAAAACTGTCTATCCTACTGAGAAGGTCACTGTGAATGGAACTCCATACCACAAGAGTTGCTTCAAATGCTGCCATGGAGGGTGTGTTATTAGTCCCTCCAATTACATTGCACATGAGGGAAAACTCTACTGCAAGCACCACCATATCCAACTCATCAAGGAGAAGGGCAATTTAAGCCAGCTTGAAGGTGACAATGAGAAGAGTGCAGCAATTCAAGGGAAAATCAATGGCGACGAGGTGGTCGCGGCCGAGACATTAATTGCTTGA 609 0.4286 MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQIFKRTGSLEKSFEGTPKIAKPEKIIDNEKPAVAKASSMFGGTRDKCAGCQKTVYPTEKVTVNGTPYHKSCFKCCHGGCVISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQLEGDNEKSAAIQGKINGDEVVAAETLIA* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev07g0913 202 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Aev07g0913 202 ProSiteProfiles LIM domain profile. 108 168 IPR001781 -
Aev07g0913 202 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Aev07g0913 202 Gene3D Cysteine Rich Protein 105 174 - -
Aev07g0913 202 Gene3D Cysteine Rich Protein 4 74 - -
Aev07g0913 202 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 102 135 - -
Aev07g0913 202 SMART lim_4 109 161 IPR001781 -
Aev07g0913 202 SMART lim_4 9 61 IPR001781 -
Aev07g0913 202 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Aev07g0913 202 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Aev07g0913 202 PANTHER OS06G0237300 PROTEIN 1 189 IPR045268 GO:0051015
Aev07g0913 202 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 175 - -
Aev07g0913 202 Pfam LIM domain 10 63 IPR001781 -
Aev07g0913 202 Pfam LIM domain 110 164 IPR001781 -
Aev07g0913 202 CDD LIM2_SF3 110 170 - -
Aev07g0913 202 PANTHER LIM DOMAIN-CONTAINING PROTEIN WLIM1-LIKE 1 189 - -
Aev07g0913 202 CDD LIM1_SF3 6 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev07g0913 Aev-Chr7 6472292 6474329 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Aev07g0913 LIM 1.6e-12 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev07g0913 07 6472292 6474329 Aev07g0913 07 6472292 6474329 ECH
Aev07g0913 07 6472292 6474329 Aev08g0410 08 2269006 2270480 PCT