LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aev07g0701	ATGGCTTCCTTAGAAGAAAAGGTTAAAACTTGTGGTGTTGGAGTTGTTGGGGGTCAAACTCTGGTTGCTGAGATGAAACTTCTGAAAGAAATGCAGGAACAATCTGGGGTTAAGAAGACTTTGAATTCAGAGTTATGGCATGCTTGTGCAGGACCTCTTGTGTCTCTGCCTCAAGTTGGGAGTCTTGTGTATTACTTTCCTCAGGGACATAGTGAACAGGTAGCAGCTTCTACTAGAAGAACAGCAACATCACAGATTCCAAATTATCCAAATCTTCCATCTCAGTTGCTATGTCAAGTTCAAAATGTCACACTTCATGCTGACAAAGAGACCGATGAAATCTACGCCCAGATGAGTCTCCAGCCTTTGAATTCTGAAAAAGATGTGTTTCCTATATCTGATTTTGGGCTAAAGCACAGTAAGCATCCGAGTGAGTTTTTCTGCAAAACTTTGACTGCTAGTGATACCAGCACACATGGAGGTTTTTCGGTTCCTCGGAGGGCAGCAGAGAAGCTCTTTCCTCCATTGGATTACACAATTCAACCCCCAACCCAAGAACTAGTTGTCCGTGATTTGCACGACAATACCTGGACGTTTCGCCATATATACCGAGGTCAGCCAAAGAGACACCTTCTCACAACAGGATGGAGTTTATTTGTTGGATCAAAAAGGCTCAGAGCAGGTGATTCTGTTCTTTTTATCAGGGATGAGAAATCGCAATTGCGAGTTGGTGTTAGGCGTGTGAATCGTCAACAGACAACGCTTCCATCATCAGTACTTTCTGCTGATAGCATGCACATAGGTGTGCTTGCGGCTGCAGCTCATGCTGCTGCTAGTCGAATCCCATTCACTATTTTCTACAATCCAAGGGCATGTCCTTCAGAGTTTGTCATTCCACTTGCTAAATACAGAAAAGCTGTATATGGGACTCAACTCTCAGTTGGCATGAGATTTGGTATGATGTTTGAGACGGAAGAATCTGGCAAGCGTCGGTATATGGGTACAATAGTTGGTATCAGTGACTTGGATCCTTTGAGGTGGCCTGGTTCTAAGTGGCGAAATATTCAGGTCGAGTGGGATGAGCCAGGATGTGGTGATAAGCAGAATAGAGTTAGTCTATGGGAGATTGAGACTCCTGAAAGCCTTTTTATCTTCCCTTCCTTGACGTCAAGTCTTAAACGGCCATTGCAACCCGGATTTTTGGAAAATGAGTGGGGAACTTTGATAAGAAGACCTTTTATAAGAGTTCCTGAAAACGGTGCGGTTGATCTCTCAAGCTCAATGCCGAATCTGTACTCAGAACACCTGATGAAAATGCTTTTCAAGCCCCAACTTGTTAACAATAACGGAGCCATTTTACCGGTCACAATGCAACAAGATCCTGCTGCCATGAGAAGTAGCTTACAAGAGGTGAAGACTGCATCAGCAATGGACAACCAAAAAGTTAATCTTGCAAGTACAGAGATTATGCCACCGAAAAATCTGCAATCCCAATCCGTCCCTGACCAAGCTAATGCGTTTAGCTCGCAATCCATGGCCAAAATCGATAGTAACCTGTCTTCAGGAACAGTTATTGATAAGCCAAAATTAGAACCTGAGGTATTATCTGATAATATGCTTGAGATGCCATCTGTAGAAGGCAGCATTGAGAAAGTAGCCACTGTAAATCCTACCAACCCTCCAAACTTTGCAAGCCAAATGGCATTCCTTAATCAAAACCAGAGTCAATTACTCACCCAATCTAATGCATGGCCTATGCAGCCTCAGCTAGAATCATCAATGTCCCATCCTCAACTAATTGATGTGCCTCAATCCGATCCTGCTATTGTAAATGGCATACTTCCTCAGCTAGACATTGATGAGTGGATGATGTATGCTTCTAACCAATCTTTTGCTGGCCAAAACCGTTCAACCGGGGTGGCTTTATCGGATTTTCAAGAGCATTCTTCACTTCAACCTCAAGTATTGAATCCTCCTATGCCTTTGATGAACCAAGACGTGTGGGATCATTATGTCAAGAATTTTAAGTTCTTATCTCAAGCGGACCAACTAACATCTGTTTGTCAGCCGGGGATGTATGGCCTTAACGGCATATCTAGTTCAAACAATTTGAGGGATCTTTCAGCTGAGAGCAATAATCAAAGTGAAATTTGTGTCAATGTTGATGTTAGTAACAGTGTTAGTACCACCATGGTTGATCCTTCAACTTCAAGCACCATTTTGGATGAGTTCTGCACTTTGAAGGATAGGGATTTTCAGAATCCACAAGATTGTATGGTTGGCAACTTAAGTTCGAGCCAGGATGTCCAGTCTCAGATAACATCTGCAAGTCTAGCCGATTCACACGCATTTCCTCTGCGAGACATCCCTGACAACTCTGGTGGTACATCTTCAAGCCATGTTGATTTCGACGAAAGCAGCTTTCTGCAGAATAACTCATGGCAACAAGTAGCACCACCGATGCGTACCTACACTAAGGTGCAAAAGGCAGGTTCAGTAGGAAGATCGATAGATGTCACTACTTTCAAGAACTATGAGGAGCTGATCCGTGCGATCGAATGCATGTTTGGACTGGATGGCCTGTTGAATGACACTAAAGGTTCCGGGTGGAAATTGGTGTATGTAGATTATGAGAATGATGTCTTACTTGTTGGTGATGATCCTTGGGAGGAATTCGTTGGCTGCGTCCGGTGCATCAGAATTTTATCACCTACAGAAGTTCAGCAGATGAGTGAAGAGGGAATGAAGCTTCTCAACAGTGGAGCCTTGCAAGGGATCAATGTTTGA	2787	0.4349	MASLEEKVKTCGVGVVGGQTLVAEMKLLKEMQEQSGVKKTLNSELWHACAGPLVSLPQVGSLVYYFPQGHSEQVAASTRRTATSQIPNYPNLPSQLLCQVQNVTLHADKETDEIYAQMSLQPLNSEKDVFPISDFGLKHSKHPSEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTIQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFIRDEKSQLRVGVRRVNRQQTTLPSSVLSADSMHIGVLAAAAHAAASRIPFTIFYNPRACPSEFVIPLAKYRKAVYGTQLSVGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNIQVEWDEPGCGDKQNRVSLWEIETPESLFIFPSLTSSLKRPLQPGFLENEWGTLIRRPFIRVPENGAVDLSSSMPNLYSEHLMKMLFKPQLVNNNGAILPVTMQQDPAAMRSSLQEVKTASAMDNQKVNLASTEIMPPKNLQSQSVPDQANAFSSQSMAKIDSNLSSGTVIDKPKLEPEVLSDNMLEMPSVEGSIEKVATVNPTNPPNFASQMAFLNQNQSQLLTQSNAWPMQPQLESSMSHPQLIDVPQSDPAIVNGILPQLDIDEWMMYASNQSFAGQNRSTGVALSDFQEHSSLQPQVLNPPMPLMNQDVWDHYVKNFKFLSQADQLTSVCQPGMYGLNGISSSNNLRDLSAESNNQSEICVNVDVSNSVSTTMVDPSTSSTILDEFCTLKDRDFQNPQDCMVGNLSSSQDVQSQITSASLADSHAFPLRDIPDNSGGTSSSHVDFDESSFLQNNSWQQVAPPMRTYTKVQKAGSVGRSIDVTTFKNYEELIRAIECMFGLDGLLNDTKGSGWKLVYVDYENDVLLVGDDPWEEFVGCVRCIRILSPTEVQQMSEEGMKLLNSGALQGINV*	929

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aev07g0701	928	Pfam	Auxin response factor	273	356	IPR010525	GO:0003677\|GO:0005634\|GO:0006355\|GO:0009725
	Aev07g0701	928	Gene3D	-	145	248	IPR015300	-
	Aev07g0701	928	ProSiteProfiles	PB1 domain profile.	822	906	IPR000270	GO:0005515
	Aev07g0701	928	PANTHER	AUXIN RESPONSE FACTOR 4-RELATED	28	926	IPR044835	GO:0003677\|GO:0006355\|GO:0009725
	Aev07g0701	928	Pfam	B3 DNA binding domain	147	248	IPR003340	GO:0003677
	Aev07g0701	928	Gene3D	-	818	911	-	-
	Aev07g0701	928	Gene3D	-	311	383	-	-
	Aev07g0701	928	Pfam	AUX/IAA family	819	908	IPR033389	-
	Aev07g0701	928	SMART	B3_2	147	249	IPR003340	GO:0003677
	Aev07g0701	928	SUPERFAMILY	CAD & PB1 domains	823	901	-	-
	Aev07g0701	928	SUPERFAMILY	DNA-binding pseudobarrel domain	135	276	IPR015300	-
	Aev07g0701	928	PANTHER	AUXIN RESPONSE FACTOR 5	28	926	-	-
	Aev07g0701	928	ProSiteProfiles	B3 DNA-binding domain profile.	147	249	IPR003340	GO:0003677
	Aev07g0701	928	CDD	B3_DNA	146	247	IPR003340	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aev07g0701	Aev-Chr7	4547715	4552305	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3-ARF	Aev07g0701		AUX_IAA	3.7e-10	CL0072

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aev07g0701	07	4547715	4552305	Aev07g0701	07	4547715	4552305	ECH