Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g0258 ATGTCTCAGGTTCAGGTTCAGCCTCAGAATGCTATGGCGGGTCCCAACGGCGGTGCTGGTGGCGCTGGGAACCAGTTCGTAACGACGTCTCTCTACGTGGGGGATCTGGACCCAAGCGTGACGGAATCGCAGCTGTATGACCTGTTCAACCAATTGGGTCAGGTTGTGTCTGTTAGGGTTTGCACGGACATGACCAGCCACAGATCCCTCGGTTACGGCTACGTCAATTACAGCAACCCACAAGATGCTGCCAGAGCATTGGATGTTCTGAACTTCACTCCTCTCAATAACAAGCCTATCCGTATAATGTATTCACATCGTGATCCCAGTATTCGCAAAAGTGGGGCTGGAAATATATTTATTAAGAATTTGGACAAAGCAATTGACCACAAGGCTTTGCATGATACTTTTTCTACATTCGGAAATATCCTTTCTTGCAAGGTAGCTACGGACTCATCTGGCCAATCAAAAGGCTATGGTTTTGTACAATTCGATAATGAGGAAGCTGCTCAAAAAGCCATAGAGAAGCTGAATGGCATGCTGCTGAATGATAAGCAAGTGTATGTGGGACCCTTTCTTCGTAAGCAAGAGCGAGAAAGTACAACCGACAAGGCAAAGTTCAACAATGTGTTCGTGAAGAATCTCTCCGAATCAACCACTGATGATGAGCTGAAGACGGTCTTTGGTGAATTTGGGCCAATTACCAGTGCTGTTGTGATGAGGGATGGTGATGGAAAATCAAAGTGCTTTGGGTTTGTAAACTTTGAGAGTCCTGATGATGCTGCTAGGGCTGTTGAGGCTCTCAATGGCAAAAAAGTCGATGACAAGGAGTGGTATGTTGGAAAAGCTCAAAAGAAATCTGAAAGGGAGCATGAATTGAAACAACGATTTGAGCAGAGCATGAAAGAAGCTGCTGATAAATATCAAGGGGCAAACCTGTACGTCAAAAACATAGATGATAGCATTGGTGATGATAAACTTAAGGAGCTGTTCTCCCCATTTGGTACCATTACTTCTTGCAAGGTTATGAGGGACCCCAATGGCATAAGTCGAGGATCAGGGTTTGTTGCATTCTCAACTCCTGAGGAGGCCTCTAGAGCTCTTTTGGAGATGAATGGCAAAATGGTGGTAAGCAAACCTCTGTATGTGACTCTTGCTCAACGCAAAGAAGATAGAAGAGCTAGACTGCAGGCTCAATTTGCTCAAATGAGACCCATTCCGATGGGCCCCACTGTTGGTCCTCGTATGCCAATGTACCCCCCTGGTGGTCCAGGTATTGGACAACAACTATTTTATGGTCAAGGCCCTCCTGCTATCATTCCTTCCCAGCCTGGATTTGGGTATCAACAGCAACTTGTGCCTGGTATGAGGCCTGGCGGCGCTCCTGTTCCAAATTTCTTTGTGCCAATGGTCCAGCAAGGACAGCAGGGGCAGCGTCCTGGTGGAAGACGCGCTGGTGGTGTCCAACAGTCCCAGCATGCTGTTCCGCTTATGCCACAACAGATGCTTCCTAGGGGGCGCATGTATCGCTATCCCCCTGGCAGGGGTATGCCTGATGTTCCCATGCCTGGGGTTGCTGGAGGCATGTTTTCTGTTCCATATGATGTCGGTGGGATGCCTATGCGTGATGCAGCACTCTCCCAGCAGGTTCCTGTTGGGGCTTTGGCTTCTGCTCTGGCCAATGCTTCTCCTGAGCAGCAGAGGACGATGTTGGGTGAGAATCTCTACCCTCTTGTGGAACAATTGGAGCCTGATAACGCTGCCAAAGTGACTGGAATGCTTCTGGAGATGGACCAGACTGAAGTTCTGCACTTGCTTGAGTCGCCAGATGCCCTTAAGGCGAAGGTGGCCGAGGCAATGGATGTCCTGAGGAATGTTGCACAGCAGCAGCAGGCTGGCGGTGCTGCTGATCAGCTTGCTTCATTGTCACTCAATGACAACCTTGTTTCTTAA 1953 0.4875 MSQVQVQPQNAMAGPNGGAGGAGNQFVTTSLYVGDLDPSVTESQLYDLFNQLGQVVSVRVCTDMTSHRSLGYGYVNYSNPQDAARALDVLNFTPLNNKPIRIMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFSTFGNILSCKVATDSSGQSKGYGFVQFDNEEAAQKAIEKLNGMLLNDKQVYVGPFLRKQERESTTDKAKFNNVFVKNLSESTTDDELKTVFGEFGPITSAVVMRDGDGKSKCFGFVNFESPDDAARAVEALNGKKVDDKEWYVGKAQKKSEREHELKQRFEQSMKEAADKYQGANLYVKNIDDSIGDDKLKELFSPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMRPIPMGPTVGPRMPMYPPGGPGIGQQLFYGQGPPAIIPSQPGFGYQQQLVPGMRPGGAPVPNFFVPMVQQGQQGQRPGGRRAGGVQQSQHAVPLMPQQMLPRGRMYRYPPGRGMPDVPMPGVAGGMFSVPYDVGGMPMRDAALSQQVPVGALASALANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMDVLRNVAQQQQAGGAADQLASLSLNDNLVS* 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g0258 650 SUPERFAMILY PABC (PABP) domain 494 644 IPR036053 GO:0003723
Aev03g0258 650 Gene3D - 118 190 IPR012677 -
Aev03g0258 650 Gene3D - 23 117 IPR012677 -
Aev03g0258 650 SMART poly_2 563 626 IPR002004 GO:0003723
Aev03g0258 650 PANTHER RNA BINDING PROTEIN 18 633 - -
Aev03g0258 650 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 30 624 IPR006515 GO:0003723
Aev03g0258 650 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 311 388 IPR000504 GO:0003723
Aev03g0258 650 SMART rrm1_1 209 281 IPR000504 GO:0003723
Aev03g0258 650 SMART rrm1_1 312 384 IPR000504 GO:0003723
Aev03g0258 650 SMART rrm1_1 30 103 IPR000504 GO:0003723
Aev03g0258 650 SMART rrm1_1 118 190 IPR000504 GO:0003723
Aev03g0258 650 CDD RRM4_I_PABPs 310 388 - -
Aev03g0258 650 CDD RRM2_I_PABPs 115 191 IPR045305 -
Aev03g0258 650 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 189 IPR000504 GO:0003723
Aev03g0258 650 PANTHER POLYADENYLATE-BINDING PROTEIN 18 633 - -
Aev03g0258 650 CDD RRM1_I_PABPs 30 109 - -
Aev03g0258 650 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 313 381 IPR000504 GO:0003723
Aev03g0258 650 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 101 IPR000504 GO:0003723
Aev03g0258 650 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 278 IPR000504 GO:0003723
Aev03g0258 650 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 187 IPR000504 GO:0003723
Aev03g0258 650 Gene3D - 193 292 IPR012677 -
Aev03g0258 650 Gene3D - 547 630 - -
Aev03g0258 650 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 285 IPR000504 GO:0003723
Aev03g0258 650 SMART rrm2_1 312 384 IPR003954 GO:0003676
Aev03g0258 650 SMART rrm2_1 118 190 IPR003954 GO:0003676
Aev03g0258 650 SMART rrm2_1 209 281 IPR003954 GO:0003676
Aev03g0258 650 SMART rrm2_1 30 103 IPR003954 GO:0003676
Aev03g0258 650 CDD RRM3_I_PABPs 207 286 - -
Aev03g0258 650 MobiDBLite consensus disorder prediction 473 492 - -
Aev03g0258 650 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 551 628 IPR002004 GO:0003723
Aev03g0258 650 Gene3D - 293 396 IPR012677 -
Aev03g0258 650 Pfam Poly-adenylate binding protein, unique domain 559 623 IPR002004 GO:0003723
Aev03g0258 650 SUPERFAMILY RNA-binding domain, RBD 29 198 IPR035979 GO:0003676
Aev03g0258 650 SUPERFAMILY RNA-binding domain, RBD 208 391 IPR035979 GO:0003676
Aev03g0258 650 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 107 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g0258 Aev-Chr3 1979836 1984440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev03g0258 28 649 Eukaryotic Initiation Factors Gene Family AT1G49760 73.776 0.0 919
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev03g0258 03 1979836 1984440 Aev03g0258 03 1979836 1984440 ECH
Aev07g0864 07 5921595 5925540 Aev03g0258 03 1979836 1984440 ECH