Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev03g0253 ATGATATTTGTTCAGGAGCATTGGTGGATAGTGGAGGCTGGTATTATTGGTTTGTTGACATGGCTGGGTCCCACAGGTGTTGTTGAGGAATACACATGGATTTGGTATGGGGTTGGTGAGGATGCTCCGTGTCAAAGGCGGGATGCAGACATTGATTATTGCATTACTGCACTCTTTGCTATAGCTGAGAAAAAAGAGAGAGAATGGACATCTTGTGCATTTCTCTGGTGGGATAGCTTGATTCTGATGCAAGGTCAAAGAAGGACAATTGGTTCCTTCCCTGCAATTGTTAGTATGATGCAAGGACCTGATTCTAGTGGCACTGATATGAATCATCAGTCTTCCTTGAATCACGCACAAAATGCAGTAGATTTCCGGTTGTCAGATTATAGAGGGTCTACTGGTGAGACTGCATGTTTACGTGCTGCTGGTCCTAATGCACAAAGCTTCAATGGCTGGAATCATGGTGAATCTAGCTCTAGACTGATCAACCAAGTCAGCGATGAAGGTCTAAAATCAGAACATGGGTTGTCTTCATGTAGTGCTACTGCTGAGGATGCTCTCAGAACAGAGGAAAGGCCATTTGAACCAAACAACATGACTTTTCCTATTAGTTCAAATACTAATCTACATGGAAACCAGTCTAGAATTCAGCCTTCGTTTTTGCAAGGTTCCAGCTCTGATCATATAACACAGAATGTTAATCTAGATATGGGGAACATTGTGCACACTACTAATCGTGGGAAAGGCATAGCAGCTAGCAGCAGTGTTCATAACAATGATACTAGTGGATTTGATAGAGAGCAGACATCATTTGGCAGTGCTTCATATAATCATACAGGATCTTCATCTGAAAGCTCTGGATACATGGCATGGGGAAATAGTGCCAGTTCAAGTTCTTCTTTAGTCAATTGGGGTTCTTCCTGCAAGAGAAAAGCCGTTGAAGGTAGTTCTAGTCAAATGTGTACTGGAGGAAGCTCAAACTCTCTGTTACAACTTGAAAATGGATGCTGGCCTACTAATCCTGTTGATCTAAATGTTTCTAGCAGCTTAAGTGTTTCTACAGCTTTAGAGGATGTTCCGGTTACTAGTCCTCCATTACAGCAGAACTTGAGAAACGAAGTGAGACAAGAACCCACTCATGCATTTCCTTTGATAACTGTTTCAGAAAATGTGGAAAGGCCTTTAAGAACCTTTGATAGGAGAATGACCCATGTACAGCATCAGGAATCTGTTCCTCTGAATTTACCATCAACAGGGAGTGCTAGGCATCATAATCATTCTTCTTCCCATCCAATACTTAGCTCTCACTCATTTAATGATTCTTTGGAATTGAGGTTAACACCTGGAGTAACAGCCGCCAGTTCAGGTGCTCCCCAGAATCCGCCACCTGCTTTTCACATACATCCTTTTCCTTGGAATAGAGCTACTAACCATAGAGGGTCTAGATCTTCAACTTCTCATAACTCTGGAGAAAGAGCAATACAGGAAGATTTTAATTTAAGGATGTTTCCAAGAGAGAGTACTGGGCACCCCATGAATGTACCTGCATCTACAGGACATGAATCTACAGCTTGGCGTACATCCTCTGCTAATGCAAACAATTCTGGAGGTGCACCTACTTCACCTTGGATTGCATCTAGTTCAAATGCCCACCCATTAGCTAGTCCCAGCTGGATTGTTAACCCTGAAGTCCCAACAGATAATCTGCAAAGATTGTCTGAGTTCAGCCCTTGGTCTCTTTTCCCATCAATTAGCACATCATCTGGTGTTCAGAATGGCCATTCTACTCCATCTCCTTCTGGCCCTCCTTCATTTACTCAGAGTTCCCGCAACAATCAACCATATCTAAGAGCCGCGTTGTTAATGGAAAGAAGGGGTGGTGATGTTCTTTCTGCTCCAAGAACGTTAACTGTTGACAATGAGGGGAGACGCCGACTAATATCTGAGATTCGCCAAGTCTTGATTGCAATGCGGAGGGGTGATAACCTACGTGCTGAGGATTATATGCTCTTTGACCCTTTCATATATCATGGTATGGCTGAAATGCATGACAGACACAGAGAAATGCGCCTTGATGTTGATAACATGTCTTATGAGGAATTGTTGGCATTGGAGGAACGTATAGGAGATGTGAGCACTGGATTGGGTGAGGATATCATTATAAAGATGATGAAACAGCGAATTTTTTTGTCTGTTATGGCAGAGTCTTCTTCTACAGATCTAGAACCTTGTTGTATCTGTCAGGAAAATTATGCTGATGGAGACAATGTTGGTTCACTGGATTGTGGGCATGAATTCCACAGTAACTGCATCAAGCAGTGGCTAATGCAGAAGAACCTTTGCCCCATTTGCAAAACAACAGGCTTAACCACATGA 2379 0.4275 MIFVQEHWWIVEAGIIGLLTWLGPTGVVEEYTWIWYGVGEDAPCQRRDADIDYCITALFAIAEKKEREWTSCAFLWWDSLILMQGQRRTIGSFPAIVSMMQGPDSSGTDMNHQSSLNHAQNAVDFRLSDYRGSTGETACLRAAGPNAQSFNGWNHGESSSRLINQVSDEGLKSEHGLSSCSATAEDALRTEERPFEPNNMTFPISSNTNLHGNQSRIQPSFLQGSSSDHITQNVNLDMGNIVHTTNRGKGIAASSSVHNNDTSGFDREQTSFGSASYNHTGSSSESSGYMAWGNSASSSSSLVNWGSSCKRKAVEGSSSQMCTGGSSNSLLQLENGCWPTNPVDLNVSSSLSVSTALEDVPVTSPPLQQNLRNEVRQEPTHAFPLITVSENVERPLRTFDRRMTHVQHQESVPLNLPSTGSARHHNHSSSHPILSSHSFNDSLELRLTPGVTAASSGAPQNPPPAFHIHPFPWNRATNHRGSRSSTSHNSGERAIQEDFNLRMFPRESTGHPMNVPASTGHESTAWRTSSANANNSGGAPTSPWIASSSNAHPLASPSWIVNPEVPTDNLQRLSEFSPWSLFPSISTSSGVQNGHSTPSPSGPPSFTQSSRNNQPYLRAALLMERRGGDVLSAPRTLTVDNEGRRRLISEIRQVLIAMRRGDNLRAEDYMLFDPFIYHGMAEMHDRHREMRLDVDNMSYEELLALEERIGDVSTGLGEDIIIKMMKQRIFLSVMAESSSTDLEPCCICQENYADGDNVGSLDCGHEFHSNCIKQWLMQKNLCPICKTTGLTT* 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev03g0253 792 SMART ring_2 745 785 IPR001841 -
Aev03g0253 792 SUPERFAMILY RING/U-box 726 788 - -
Aev03g0253 792 MobiDBLite consensus disorder prediction 512 549 - -
Aev03g0253 792 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 84 792 IPR045191 GO:0061630
Aev03g0253 792 Pfam Ring finger domain 745 786 IPR001841 -
Aev03g0253 792 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 716 789 IPR013083 -
Aev03g0253 792 MobiDBLite consensus disorder prediction 510 549 - -
Aev03g0253 792 MobiDBLite consensus disorder prediction 473 494 - -
Aev03g0253 792 CDD RING-H2_TTC3 744 786 - -
Aev03g0253 792 MobiDBLite consensus disorder prediction 587 611 - -
Aev03g0253 792 MobiDBLite consensus disorder prediction 477 494 - -
Aev03g0253 792 ProSiteProfiles Zinc finger RING-type profile. 745 786 IPR001841 -
Aev03g0253 792 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 84 792 - -
Aev03g0253 792 MobiDBLite consensus disorder prediction 414 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev03g0253 Aev-Chr3 1952529 1960100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev03g0253 100 792 C3H Transcription Factor Family AT2G15530 36.153 9.67e-106 338
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev03g0253 03 1952529 1960100 Aev03g0253 03 1952529 1960100 ECH
Aev07g0861 07 5891127 5895091 Aev03g0253 03 1952529 1960100 ECH