Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev01g0533 ATGAATCTTGCCCGGAAGGAAATGGATCGGATCAAGGGCCCGTGGAGCCCGGAAGAGGACGAGGCACTTCAGAGGCTGGTGGAGAGGCACGGGCCTAGGAACTGGTCATTGATAAGCAAATCGATCCCGGGCCGGTCTGGCAAGTCCTGCAGGCTCCGATGGTGCAACCAGCTGTCTCCTCAGGTTGAGCACCGGGCCTTCACGCCAGAAGAGGATGAGACCATAATAAAGGCCCATGTCCAGTTCGGCAACAAGTGGGCCACAATAGCCCGCCTCCTATCTGGTCGAACCGACAACGCGGTGAAAAACCACTGGAACTCAACTCTCAAGCGCAAGTGCGCTTCAATGATGATCGATGAGCCCGCCTCAGGCCCGACGGGCTTTGACGGAGGTTTCAGCTCTCAGCCGCTTAAGAGGTCAGCTAGCGCGGGCGCAGCGGTGCCGGTCTCGACTGGGCTTTATGTGAGCCCGCCTACGCCTGGAAGCCCGTCGGGATCCGATGCGAGTGAGTCCAGCGTGCGCGCGGGCTCACCGTCGTACGTGTTCAAGCCCGTGCCAAGGACAGTTATTCCGCCGCTCGAAACGACGTCGTCCTCCGATGATGGGCCTCCGACTTCTTTGTCGCTGTCGCTCCCTGGCGTGGACATCACAGAATTATCCAATCGCGTGGCGGAGGCTGTACCGTTGGTAGCGTCGGCGCCGCCAGCAACCACCGTAACTGCTCCGGCGCCGGCGCCGCAAGGGTCAGGGGCGTTTAATTTTAGCGCGGAGCTGATGGCGGTGATGCAAGAAATGGTGAGAAATGAGGTGAGGAGTTACATGGAGCAACGAAATGGGATGTGCTTTCAGGCTGCGAGTGGGTTTAGGAACGTGTCAATGAATCGAATAGGGATCAGAAGGGTCGAGTCATGA 912 0.5888 MNLARKEMDRIKGPWSPEEDEALQRLVERHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDETIIKAHVQFGNKWATIARLLSGRTDNAVKNHWNSTLKRKCASMMIDEPASGPTGFDGGFSSQPLKRSASAGAAVPVSTGLYVSPPTPGSPSGSDASESSVRAGSPSYVFKPVPRTVIPPLETTSSSDDGPPTSLSLSLPGVDITELSNRVAEAVPLVASAPPATTVTAPAPAPQGSGAFNFSAELMAVMQEMVRNEVRSYMEQRNGMCFQAASGFRNVSMNRIGIRRVES* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev01g0533 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 113 IPR017930 -
Aev01g0533 303 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Aev01g0533 303 Gene3D - 65 124 - -
Aev01g0533 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 62 IPR017930 -
Aev01g0533 303 Gene3D - 11 63 - -
Aev01g0533 303 MobiDBLite consensus disorder prediction 155 176 - -
Aev01g0533 303 Pfam Myb-like DNA-binding domain 15 73 - -
Aev01g0533 303 MobiDBLite consensus disorder prediction 154 209 - -
Aev01g0533 303 CDD SANT 14 56 IPR001005 -
Aev01g0533 303 SMART sant 11 60 IPR001005 -
Aev01g0533 303 SMART sant 63 111 IPR001005 -
Aev01g0533 303 ProSiteProfiles Myb-like domain profile. 7 58 IPR001005 -
Aev01g0533 303 SUPERFAMILY Homeodomain-like 9 105 IPR009057 -
Aev01g0533 303 PANTHER MYB PROTEIN-RELATED 1 276 - -
Aev01g0533 303 MobiDBLite consensus disorder prediction 191 209 - -
Aev01g0533 303 CDD SANT 66 109 IPR001005 -
Aev01g0533 303 PANTHER MYB TRANSCRIPTION FACTOR 1 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev01g0533 Aev-Chr1 4779138 4780049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev01g0533 2 302 MYB Transcription Factor Family AT4G37260 54.030 9.63e-103 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aev01g0533 Myb_DNA-bind_6 2.7e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev05g0681 05 4738490 4739479 Aev01g0533 01 4779138 4780049 ECH
Aev07g0886 07 6166237 6166881 Aev01g0533 01 4779138 4780049 ECH
Aev01g0533 01 4779138 4780049 Aev01g0533 01 4779138 4780049 ECH
Aev01g0533 01 4779138 4780049 Aev05g0681 05 4738490 4739479 PCT