Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g2132 ATGTTGTTGTTTGAGGCAAAAGACTCGACGATCTTCAAGCTTTTCGGGAAGACGATCCCGGCATTGTCTTCTGGTGATGTTGTTGCTGACAACAGTGTTAATGGGGGTGCTGAAGAAGAGCACGAGATTGAGCAGGAAACAGTAGGAGAGGAACCAACTGAAACTAAGAAGAAAGATGAAGTGATCAATCTTGATACTGTCTCAAGACTGGGGGAAGAGCCTATTAGCCCCTCTACAGAGAAGGAGGATCTTACATTGAAAAGTTCAAAAAAGACTGAACAAGAACAAGAACAAGGTGAAAATTCACAAGATAAAACCCTGAAAAAGCCGGACAAAATACTGCCTTGTCCCCGCTGCAATAGCATGGACACCAAGTTCTGCTACTACAATAATTACAACGTCAACCAACCCCGCCATTTCTGCAAGAAATGCCAGAGGTACTGGACTGCCGGTGGAGTGACGAGGAATGTTCCCGTGGGTGCTGGTCGCAGGAAGAACAAGAATTTTGCTTCTCAGTATCGTCAGATAACTGTTCCTGAAGAAGCACTCTTGAATTCTCAGCCGGACTTGCCAAATGGAGTCTTTCATCCTTCCTTGAACTGTAATGCCACACTCCTAGCATTTGGGTCCGATACACCCTTGTGTGAATCAATGACATCTGTTTTGAACCTAGCTGATAGAGCAATGAACAACAATTCCACAACAAATGGTTTTAATGACTCGGAAGAACTAGAAACTCCTGTTACTTATGTTGGTGGAGAAACGGTGAATGATGATTCCAATAAATCTTCTAACACATTGACAAAGCCAATGGAAGATGAAACCACCGTTCATGGGTCCGAAGAACAAGTCATAGAGAATTGTCATCCCTTCCCACCTCATGTTCCCTACTTTCCCAGTGCCCCTTGGTCTTTACCATGGAATCCAGCACTGTGGAGCTCCCCAGTACCATCATCGCCACCTCCTTTTTTCCCACAAGGATATACCATGCCTCTCTATCCTGCAGCAGCTTGTTGGGGTTTTACTATGCCGGGTGCGTGGAGCGTCCCATGGCTAGCACAACCGTTGCCAAATAGTACAGTTTCTAACTCTGGCCCTAACTCCCCAACCCTGGGAAAACATTCGAGGGAAGAAAACATGCTTAAATCAAATGAGGCAGCGGTTGAGGATGAACGTAGCAAGGGAAATAGTAAAGAGAAGTGTCTATGGGTTCCAAAAACATTGAGGATTGAGGACCTAGGAGAAGCAGCAAAAAGCTCTATATGGAGAACACTAGGGATTAAAAATAATAAAGCAGAATTATTTCCCGGGGGAGGACTCTTCAAGACATTCCCATCACAGGGTGGTGAAACAAATTGTGTGATACAAAACTCATCGGTCTTGCAGGCCAATCCAGCAGCGCTGTCTAGGTCAATTAACTTTCATGAGACCTCATAG 1437 0.4495 MLLFEAKDSTIFKLFGKTIPALSSGDVVADNSVNGGAEEEHEIEQETVGEEPTETKKKDEVINLDTVSRLGEEPISPSTEKEDLTLKSSKKTEQEQEQGENSQDKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKKCQRYWTAGGVTRNVPVGAGRRKNKNFASQYRQITVPEEALLNSQPDLPNGVFHPSLNCNATLLAFGSDTPLCESMTSVLNLADRAMNNNSTTNGFNDSEELETPVTYVGGETVNDDSNKSSNTLTKPMEDETTVHGSEEQVIENCHPFPPHVPYFPSAPWSLPWNPALWSSPVPSSPPPFFPQGYTMPLYPAAACWGFTMPGAWSVPWLAQPLPNSTVSNSGPNSPTLGKHSREENMLKSNEAAVEDERSKGNSKEKCLWVPKTLRIEDLGEAAKSSIWRTLGIKNNKAELFPGGGLFKTFPSQGGETNCVIQNSSVLQANPAALSRSINFHETS 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g2132 478 MobiDBLite consensus disorder prediction 375 393 - -
Aed9g2132 478 PANTHER CYCLIC DOF FACTOR 2 5 477 IPR045174 GO:0003700|GO:0006355
Aed9g2132 478 MobiDBLite consensus disorder prediction 360 374 - -
Aed9g2132 478 ProSiteProfiles Zinc finger Dof-type profile. 114 168 IPR003851 GO:0003677|GO:0006355
Aed9g2132 478 MobiDBLite consensus disorder prediction 30 112 - -
Aed9g2132 478 MobiDBLite consensus disorder prediction 75 112 - -
Aed9g2132 478 MobiDBLite consensus disorder prediction 360 393 - -
Aed9g2132 478 MobiDBLite consensus disorder prediction 35 66 - -
Aed9g2132 478 ProSitePatterns Zinc finger Dof-type signature. 116 152 IPR003851 GO:0003677|GO:0006355
Aed9g2132 478 Pfam Dof domain, zinc finger 111 168 IPR003851 GO:0003677|GO:0006355
Aed9g2132 478 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 5 477 - -
Aed9g2132 478 MobiDBLite consensus disorder prediction 253 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g2132 Aed-Chr9 24490095 24493524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g2132 12 478 C2C2-Dof Transcription Factor Family AT5G39660 41.165 2.83e-89 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Aed9g2132 zf-Dof 9.3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g2132 - - gmx:100775675 749.584