Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0553 ATGGAGCAAGGAGTTGGAGAAGGAGGTGAGATGAACAAGCATCCTCATGATGCAAGAGTGAAGGAGATTCAACAAGGTGGTGATGCGCAAGTTCAGGTTCCTCAACAAGCCCAAAAGTGCCCTCGATGCGACTCACCCAACACCAAATTTTGCTATTACAACAACTATAGCCTGTCACAGCCTCGTTACTTTTGCAAAACATGCAGGAGGTACTGGACTCAAGGTGGAACCTTGAGGAACGTTCCTGTTGGTGGTGGTTGCCGCAAGGGGAAGCGCGCCAAGAGTTCTAATAATTCATCTTCATCGGAGATTAATTCTTCTTCCCGGTCGCTGCCGCAAGGGGTGGTGGTTCAAATAACTCAACCAGCTGCAGGTCCACCCTTAACATCGGCTAAAGAGCCTTCTTCAGTTGTGGCTAATTCACCCTTTTACCATAGTGGCGGCGGCGGCGGGTACTTGTCTTCTTTGGCTGCTATGCATTCACTGAACCCTTTTGTGGCGGCGGGTAGTGACGCCAGCTTCCGTTCTTCTAATTTGGGCCTTCTATCCGGTTTCAATGTCCAGCGTCCAATTCGTCCACCTCAGTTGTATCAAATGGGGAGTGGTGAAAGGGAGATGGTGTCTCTGTATGAACAAGCTGGTTCTGGTTTGGTTAATCCATCCTCCACCATGGCTAATACTAATAGCAGTGGTACTGTTTCTCACCATGATCGTTGGCCTCAGAGCTTCATCAATAATAGGGCCTCTGATGCCTCTATGTGGAGCACCATCAGCACCACTGTTGGTAGTAACTCTGAGAGGACTAGTACAGCTGCTGTTGCTTCTTCTTCTTTGCTCACAAATAATCAATGGCCTAATCTTCCAGGCTATGGCCCTCCACCGTGA 885 0.4904 MEQGVGEGGEMNKHPHDARVKEIQQGGDAQVQVPQQAQKCPRCDSPNTKFCYYNNYSLSQPRYFCKTCRRYWTQGGTLRNVPVGGGCRKGKRAKSSNNSSSSEINSSSRSLPQGVVVQITQPAAGPPLTSAKEPSSVVANSPFYHSGGGGGYLSSLAAMHSLNPFVAAGSDASFRSSNLGLLSGFNVQRPIRPPQLYQMGSGEREMVSLYEQAGSGLVNPSSTMANTNSSGTVSHHDRWPQSFINNRASDASMWSTISTTVGSNSERTSTAAVASSSLLTNNQWPNLPGYGPPP 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0553 294 PANTHER DOF ZINC FINGER PROTEIN DOF5.4-LIKE ISOFORM X1 4 293 - -
Aed9g0553 294 ProSitePatterns Zinc finger Dof-type signature. 40 76 IPR003851 GO:0003677|GO:0006355
Aed9g0553 294 Pfam Dof domain, zinc finger 36 92 IPR003851 GO:0003677|GO:0006355
Aed9g0553 294 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 4 293 IPR045174 GO:0003700|GO:0006355
Aed9g0553 294 MobiDBLite consensus disorder prediction 92 112 - -
Aed9g0553 294 ProSiteProfiles Zinc finger Dof-type profile. 38 92 IPR003851 GO:0003677|GO:0006355
Aed9g0553 294 MobiDBLite consensus disorder prediction 82 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0553 Aed-Chr9 3859809 3860693 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g0553 32 96 C2C2-Dof Transcription Factor Family AT5G60200 80.000 2.70e-35 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Aed9g0553 zf-Dof 1.8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0553 - - gmx:102668884 381.333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g0553 9 3859809 3860693 Aed9g0553 9 3859809 3860693 ECH
Aed10g1875 10 23089379 23090257 Aed9g0553 9 3859809 3860693 PCT