Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0552 ATGTCGGGTAACTGTGAGAAAATGGTAGCCATCCCTCCAACGACCAACCAATGGCCACAGCCTCAGGTGGATGATCATCAGAAGGTGTTGATGGAAAAAACAGCAGGTGAAGATCAGAAGCTTATGCAGCAACAGCAACAGCAACAAGAAGCTCTGAAGTGCCCTCGTTGTGACTCATCCAATACCAAGTTCTGCTATTACAACAACTACAGTTTGTCTCAGCCACGATACTTCTGCAAAGCCTGCAAGCGCTATTGGACAAGAGGTGGAACCCTCAGGAACGTTCCTGTTGGTGGAGGCTGCAGAAAAAACAAGCGTCTCAAGCGTCCAATAACTAACTCTTCTACCCTTCACACTGCTTCTTCTACTTCTAATAATTCTTCTGCTTCACAATCACAACCCCAGATCGACACTACTACTGCTTCAACCCCTTTGTTTTATGGCTCAAGCGATGTCAATCTTCCATTGTTCTCTAGGTTCGCTTCTAGAATCTCCAGTTCCGGGTTTGATCTTCAGCATAATAATTCCCTTGGATTAGGTTTTTCATCCGGTATCTCTATGTCCAATAATGAAGCAGGTGATAATAATAACGGGTTTTTTAATTCAAACAACACGCTTCTTTCAAGTTACAATTCCATCTTTGGTGGTTCTACATCCACTACTCCAGCTATGTCTTCTCTTTTGAGCTCAACTTTGCTTCAACAGAAGTTCATGAGTACTAGTGTTGATAGCAGCAACACTTTCCAGCGTGGCATAGGCTTAGCCCCAGTAGAGCAGTTGCAAATGACAAGTCATGAGACATTAAAAGATGTGAAAGTAGAATTAGGACAAAACAACAGGTTGTTGGAGTGGAATGGGAATGGTGCTTGCCAAAGCCAGATCCAGCATGTGGCCGCCACCTTGTACGATCCTTCGCTTTATTGGAACAATTCACCAACAGCTTTCGGTGTTTGGAACGATCAACCTGGTTCATCGCTCACTTCTCTCATCTAG 993 0.4411 MSGNCEKMVAIPPTTNQWPQPQVDDHQKVLMEKTAGEDQKLMQQQQQQQEALKCPRCDSSNTKFCYYNNYSLSQPRYFCKACKRYWTRGGTLRNVPVGGGCRKNKRLKRPITNSSTLHTASSTSNNSSASQSQPQIDTTTASTPLFYGSSDVNLPLFSRFASRISSSGFDLQHNNSLGLGFSSGISMSNNEAGDNNNGFFNSNNTLLSSYNSIFGGSTSTTPAMSSLLSSTLLQQKFMSTSVDSSNTFQRGIGLAPVEQLQMTSHETLKDVKVELGQNNRLLEWNGNGACQSQIQHVAATLYDPSLYWNNSPTAFGVWNDQPGSSLTSLI 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0552 330 Pfam Dof domain, zinc finger 50 106 IPR003851 GO:0003677|GO:0006355
Aed9g0552 330 MobiDBLite consensus disorder prediction 110 136 - -
Aed9g0552 330 ProSiteProfiles Zinc finger Dof-type profile. 52 106 IPR003851 GO:0003677|GO:0006355
Aed9g0552 330 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-LIKE 3 317 - -
Aed9g0552 330 ProSitePatterns Zinc finger Dof-type signature. 54 90 IPR003851 GO:0003677|GO:0006355
Aed9g0552 330 MobiDBLite consensus disorder prediction 99 136 - -
Aed9g0552 330 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 3 317 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0552 Aed-Chr9 3852790 3855113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g0552 1 330 C2C2-Dof Transcription Factor Family AT1G28310 38.544 4.49e-40 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Aed9g0552 zf-Dof 9.7e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0552 - - gmx:778098 399.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g0552 9 3852790 3855113 Aed9g0552 9 3852790 3855113 ECH
Aed10g1874 10 23082968 23084199 Aed9g0552 9 3852790 3855113 PCT