Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0478 ATGGGCGAGGAATCTGAATCTGAACAAGGGATTAAGCTGTTTGGTGCAATGATTACATTGAAGAATATTTGTAGTGGAAGCGAAGAAGAATATGAGAAGAGTACCAGTGCGGAGAAGAGAGTAGGCTGTCCGAGATGCAAGAGCATGGAAACTAAATTCTGTTACTTCAATAACTACAACGTTAATCAGCCAAGGCATTTTTGCAAAAGCTGCCAGAGGTACTGGACCGCGGGTGGGGCCCTCCGAAACGTCGCGGTTGGCGCCGGACGCCGCCGAAAGGCCAAGTCGCCGCCGTGCCATGTCCATGTTCATGTTTCCATGCCCAAGAGGCGGAGGACCCCTTCAGCTGAGCATGAAGGTCAATAA 366 0.5027 MGEESESEQGIKLFGAMITLKNICSGSEEEYEKSTSAEKRVGCPRCKSMETKFCYFNNYNVNQPRHFCKSCQRYWTAGGALRNVAVGAGRRRKAKSPPCHVHVHVSMPKRRRTPSAEHEGQ 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0478 121 ProSiteProfiles Zinc finger Dof-type profile. 41 95 IPR003851 GO:0003677|GO:0006355
Aed9g0478 121 Pfam Dof domain, zinc finger 40 95 IPR003851 GO:0003677|GO:0006355
Aed9g0478 121 ProSitePatterns Zinc finger Dof-type signature. 43 79 IPR003851 GO:0003677|GO:0006355
Aed9g0478 121 PANTHER CYCLIC DOF FACTOR 2 29 103 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0478 Aed-Chr9 3344609 3345711 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed9g0478 5 103 C2C2-Dof Transcription Factor Family AT2G34140 55.085 7.61e-37 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Aed9g0478 zf-Dof 2.3e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed9g0478 - - gmx:100776748 150.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g0478 9 3344609 3345711 Aed9g0478 9 3344609 3345711 ECH