Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0258 ATGCTGAAATCAGGAATGGGAATTGAGGAGAGAAAGCAAGTGAAGAAGCCAGCACAGGCCAGCTCAAGAAAAGGGTGTATGAGAGGTAAAGGAGGTCCTGAGAATGCGAGTTGCACCTACAAAGGGGTGAGGCAGAGAACCTGGGGTAAATGGGTAGCTGAAATCCGTGAACCCAATCGAGGTGCTAGACTCTGGCTCGGGACGTTTGAAACCTCTCATGAAGCTGCTTTGGCTTATGATGCTGCTGCACGTAAGCTTTATGGCTCTGATGCCAAACTCAATTTACCAGAACTCATCAAATCTCATTCTCAGTGTCCACCACCACAACCTTCTGTTACCAACACTCAAATGGAGAACCTGCTTCATCAAAACAACATAGACATCATGGTTACATGTACTAATTTCAACACCATCAATCCTGCAGCAGTTTCCATGGCCTCTCAGCAGGTTGGAGTTGGACCAATTTACAGTGACTCCATCATGTCTCTTCCATTGGATACCAATCTCAATCCGGTTGATACCTATGCCAAACCTCTGGAGAACAACAACGATGGCGAGTTTCGTCCTTCGTGGGAGACAATGAATGACAGTTTGTCCGTTTTTGATGATTCCATTTGGGCTGAAGCTGCTATGTCCTTAGACATTCCTATGATTGAAGCAGAGACTGCGATTTACACATCAGGGAACAACTTGGCAGATGTGGGTGTGTGGGACTCTCTACAAACCCCATGGTGCATGTAG 741 0.4642 MLKSGMGIEERKQVKKPAQASSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFETSHEAALAYDAAARKLYGSDAKLNLPELIKSHSQCPPPQPSVTNTQMENLLHQNNIDIMVTCTNFNTINPAAVSMASQQVGVGPIYSDSIMSLPLDTNLNPVDTYAKPLENNNDGEFRPSWETMNDSLSVFDDSIWAEAAMSLDIPMIEAETAIYTSGNNLADVGVWDSLQTPWCM 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0258 246 Gene3D AP2/ERF domain 39 97 IPR036955 GO:0003700|GO:0006355
Aed9g0258 246 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 14 238 - -
Aed9g0258 246 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D 14 238 - -
Aed9g0258 246 Pfam AP2 domain 39 88 IPR001471 GO:0003700|GO:0006355
Aed9g0258 246 SUPERFAMILY DNA-binding domain 39 96 IPR016177 GO:0003677
Aed9g0258 246 MobiDBLite consensus disorder prediction 1 38 - -
Aed9g0258 246 CDD AP2 38 98 IPR001471 GO:0003700|GO:0006355
Aed9g0258 246 MobiDBLite consensus disorder prediction 1 17 - -
Aed9g0258 246 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Aed9g0258 246 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Aed9g0258 246 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
Aed9g0258 246 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0258 Aed-Chr9 1854408 1855148 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Aed9g0258 AP2 7.6e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g0258 9 1854408 1855148 Aed9g0258 9 1854408 1855148 ECH
Aed11g0080 11 663983 664891 Aed9g0258 9 1854408 1855148 PCT