Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed9g0253 ATGGCTAATCCCTCACTCTTGTTCCTTGGTCTCCTCGTTTTCTCCGTCGCCGTAGCCACCGCCGATGAAGACGACCTTCTGATCCGTCAAGTGGTGCCGGACGCGGAGGAGCGCCTGCTCAACGCGGAGCACCACTTCTCCGCCTTCAAGATCAAGTTCGCCAAGACCTACGCCACGCAGGAGGAGCACGACCACCGCTTCCGTATCTTCAAGAACAATTTGCTCCGCGCCAAGTCGCACCAGAAGCTCGACCCCTCCGCCGTCCACGGCGTTACCAGGTTCTCCGATCTCACTCCATCGGAGTTTCGCGGCCAGTTCCTCGGCCTCAAGCCGCTCCGTCTTCCCAGCGACACACAGAAGGCTCCGATCCTGCCGACCAACGACCTCCCTGCCGATTTCGACTGGCGCGACCATGGAGCCGTTGTTGGCGTCAAGAATCAGGGCTCCTGCGGATCGTGTTGGTCGTTTAGCGCTGTTGGAGCGTTGGAAGGTGCTCACTTTCTCTCCACCGGTGAGCTCGTGAGCCTTAGCGAGCAACAACTCGTGGATTGCGATCACGAGACATATATTGGTGGCGTCTCATGCCCATACATCTGTGGCAAGCATTTGGATCATGGGGTTCTTCTTGTGGGCTATGGTTCTGGTGCTTATGCTCCAATTCGTTTTAAGGAAAAACCTTATTGGATCATAAAGAATTCATGGGGAGAGAGCTGGGGAGAAAATGGATATTACAAGATCTGCAGAGGGCGCAATGTATGTGGGGTGGACTCCATGGTCTCAACTGTAGCTGCTATTCATGTTTCTAACCATTAA 813 0.5486 MANPSLLFLGLLVFSVAVATADEDDLLIRQVVPDAEERLLNAEHHFSAFKIKFAKTYATQEEHDHRFRIFKNNLLRAKSHQKLDPSAVHGVTRFSDLTPSEFRGQFLGLKPLRLPSDTQKAPILPTNDLPADFDWRDHGAVVGVKNQGSCGSCWSFSAVGALEGAHFLSTGELVSLSEQQLVDCDHETYIGGVSCPYICGKHLDHGVLLVGYGSGAYAPIRFKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMVSTVAAIHVSNH 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed9g0253 270 SMART pept_c1 129 263 IPR000668 GO:0006508|GO:0008234
Aed9g0253 270 SUPERFAMILY Cysteine proteinases 43 263 IPR038765 -
Aed9g0253 270 Gene3D Cysteine proteinases 189 266 - -
Aed9g0253 270 CDD Peptidase_C1A 130 262 IPR039417 -
Aed9g0253 270 SMART Inhibitor_I29_2 46 102 IPR013201 -
Aed9g0253 270 Pfam Cathepsin propeptide inhibitor domain (I29) 46 102 IPR013201 -
Aed9g0253 270 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 187 264 - -
Aed9g0253 270 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 203 213 IPR025660 -
Aed9g0253 270 PRINTS Papain cysteine protease (C1) family signature 147 162 IPR000668 GO:0006508|GO:0008234
Aed9g0253 270 PRINTS Papain cysteine protease (C1) family signature 227 233 IPR000668 GO:0006508|GO:0008234
Aed9g0253 270 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 147 158 IPR000169 -
Aed9g0253 270 Gene3D Cysteine proteinases 30 188 - -
Aed9g0253 270 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 227 246 IPR025661 -
Aed9g0253 270 Pfam Papain family cysteine protease 129 186 IPR000668 GO:0006508|GO:0008234
Aed9g0253 270 Pfam Papain family cysteine protease 187 261 IPR000668 GO:0006508|GO:0008234
Aed9g0253 270 PANTHER CYSTEINE PROTEASE RD19C-RELATED 19 186 - -
Aed9g0253 270 PANTHER CYSTEINE PROTEASE RD19C-RELATED 187 264 - -
Aed9g0253 270 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 19 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed9g0253 Aed-Chr9 1819846 1821218 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed9g0253 9 1819846 1821218 Aed9g0253 9 1819846 1821218 ECH
Aed11g0074 11 614340 616852 Aed9g0253 9 1819846 1821218 PCT