Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g1943 ATGGACACACCTCACTGGCCACAGGAGATGGTGGTGAAAGCAATAGAAGCTGATATAGTGGTGGTGACAAATAGTACAAGAAAGGGTGGTGGTGTGGAAAGTAGGAAGCAGGCAAGGCCACAGAAAGAAGAAGCCATAAACTGTCCAAGGTGTAATTCAATAAACACAAAGTTCTGTTACTACAACAACTACAGCCTCACACAGCCTAGGTATTTCTGCAAGACTTGTAGAAGGTATTGGACTGAAGGTGGATCCCTAAGAAACATCCCTGTTGGAGGTGGTTGCAGGAAGAACAACAAGACTAGATCTTCTTCTGCTTCTACTTCCAATAAGAACCTTCCACCTGATCTGCTCATCGCACCTCCAACTTTCTCACACACTCCTCAAACTCAAAACCCTAAGAGTAATACTAATAACATTAATCTTCAAGGCCAAGATCTCAATTTGTCTTTCACCACCCCAGATTTCAGAAAAATCTCTGAATTGGTCCAACAAAACAACAACAATAGCAGCAACAGTATGTCAGCTTCAGCTTCTTCTTCTTCTTCAACCACCACTACTATTACAACTACAGCTTCCACTTCTCATCAACTTTCTGCATTGGAGCTTCTTACTGGGATCACTTCATCAACTTCCACTACTGCTTTTACTTCTTTCATGCCTATGCCAGTAGTTCCAGCAACTGATCCAAATTCTGTCTACACTTGTGGGTTTCCTCTGCAAGATTTCAAGCCAACCTTGAATTTCTCTTTAGAAAACGGGTACCACCCAAGCCTTCATAATAATGTTCAAACTGGGAGGCTCTTGTTTCCATTTGAGGACTTGAACTTAAAACAGGATTCTGGCCCCACCAACACAATGGATCAGAAGCAACAAGGAGATCATTCAACTCATGGGTATTGGACTGGTGGAATGTTAGGGGGAGGATCATGGTAA 936 0.4263 MDTPHWPQEMVVKAIEADIVVVTNSTRKGGGVESRKQARPQKEEAINCPRCNSINTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGCRKNNKTRSSSASTSNKNLPPDLLIAPPTFSHTPQTQNPKSNTNNINLQGQDLNLSFTTPDFRKISELVQQNNNNSSNSMSASASSSSSTTTTITTTASTSHQLSALELLTGITSSTSTTAFTSFMPMPVVPATDPNSVYTCGFPLQDFKPTLNFSLENGYHPSLHNNVQTGRLLFPFEDLNLKQDSGPTNTMDQKQQGDHSTHGYWTGGMLGGGSW 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g1943 311 MobiDBLite consensus disorder prediction 283 311 - -
Aed8g1943 311 MobiDBLite consensus disorder prediction 283 298 - -
Aed8g1943 311 Pfam Dof domain, zinc finger 44 100 IPR003851 GO:0003677|GO:0006355
Aed8g1943 311 MobiDBLite consensus disorder prediction 90 138 - -
Aed8g1943 311 PANTHER DOF ZINC FINGER PROTEIN DOF4.6-LIKE 1 306 - -
Aed8g1943 311 ProSiteProfiles Zinc finger Dof-type profile. 46 100 IPR003851 GO:0003677|GO:0006355
Aed8g1943 311 MobiDBLite consensus disorder prediction 97 114 - -
Aed8g1943 311 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 1 306 IPR045174 GO:0003700|GO:0006355
Aed8g1943 311 ProSitePatterns Zinc finger Dof-type signature. 48 84 IPR003851 GO:0003677|GO:0006355
Aed8g1943 311 MobiDBLite consensus disorder prediction 123 138 - -
Aed8g1943 311 MobiDBLite consensus disorder prediction 167 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g1943 Aed-Chr8 24000455 24002949 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g1943 1 311 C2C2-Dof Transcription Factor Family AT4G24060 37.883 4.39e-54 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Aed8g1943 zf-Dof 1.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g1943 - - gmx:100782268 328.561