Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0067 ATGGGTGCAGGGAAAGGGAAAGGGGGTGGTGTTTCGTTGTCGAAAGCGGTGGCTATAGTAGCAATCGCGCTTGTAGCTAGCTTGGGCTTGGGAGAGGCCCAATCGCCGGCGAGCTTCAAGTGCAGCGCGAACAGCAACCTCACGTGTCACGCGCTGGTAGGCTACTCCCACGCGAACAGCACCACACTGGGCGACATCAAGAAGCTCTTCAACGTGAAGCACATCCTGGACCTGGCGGGAGCGAACAACTTCCCCAGCAACGCCACGAACAGCTACGCTGTGGGCCCCAACGAGGTAGTGAAAGTGCCGTTCCCGTGCAGGTGCAACAGCAACGGCACGGGTCTCTCGGACCGCGTTCCGCTCTACAAGATAAAAAAGAACGACACGCTGTACGATATCGCGACGAAGACGTTCGCGGGTCTGGTGCAGTATCCGCAGATCCAGGAGGCGAATAACATTTCCAACGCCGACAACATCACCGCCGGGGACACCATTTACATCCCGCTGCCGTGCAGCTGCGACGAGGTGGGCGGGAGCAGGGTGGTCCACTATGCACATCGGGTGATGGCGGGGAGCTCAATCGAGGGCATTGCCGCACAGTTTGGGGTAGACCAGAATACTCTTCTCAACCTCAATGGTATCTCTGACCCCAAAACCCTTCAGGCCGACCAGATTCTCGATGTTCCCCTCCAAGCTTGTTCCTCCAGTGTGAAAAATAGTTCATTGGACTATCCTTTGCTTCTCCCAAATGCTACTTACGTCTACACTGCCCTTGAATGCGTCAAATGCAACTGTGACTTCCGTAACAGTAGGATATTACAATGCGAGCCATCCCAACTGAAACCATCCAAATCGTCTGTTTGCCCCTCTATGGAATGCTCAAGCAACGTCCTCATTGGCGCCATCATTTCCAATGCTACTACAGATTCCTGCAATCGCACAACTTGTGCCTATACTGGTTTTACCTTCCACAATATCTCAGCAGAAGTTGTAACAGAGAACACTTGTGCTGTGCCGCCCAGTGGTTCAGGAGGATCCACTGGTTCTGGTTCAGATTCTGGAGCGCCAAGTAGCACCTTGCAAGGCTTGTTTTGGAGTAATCTTTTCATTGCCATTCACTTTCTCCTCTTTCTTCTCTATGTTTTGTAG 1149 0.53 MGAGKGKGGGVSLSKAVAIVAIALVASLGLGEAQSPASFKCSANSNLTCHALVGYSHANSTTLGDIKKLFNVKHILDLAGANNFPSNATNSYAVGPNEVVKVPFPCRCNSNGTGLSDRVPLYKIKKNDTLYDIATKTFAGLVQYPQIQEANNISNADNITAGDTIYIPLPCSCDEVGGSRVVHYAHRVMAGSSIEGIAAQFGVDQNTLLNLNGISDPKTLQADQILDVPLQACSSSVKNSSLDYPLLLPNATYVYTALECVKCNCDFRNSRILQCEPSQLKPSKSSVCPSMECSSNVLIGAIISNATTDSCNRTTCAYTGFTFHNISAEVVTENTCAVPPSGSGGSTGSGSDSGAPSSTLQGLFWSNLFIAIHFLLFLLYVL 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0067 382 CDD LysM 186 228 IPR018392 -
Aed8g0067 382 ProSiteProfiles LysM domain profile. 184 228 IPR018392 -
Aed8g0067 382 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 21 334 - -
Aed8g0067 382 SMART LysM_2 121 168 IPR018392 -
Aed8g0067 382 SMART LysM_2 185 229 IPR018392 -
Aed8g0067 382 Gene3D LysM domain 179 242 IPR036779 -
Aed8g0067 382 SUPERFAMILY LysM domain 121 169 IPR036779 -
Aed8g0067 382 ProSiteProfiles LysM domain profile. 120 167 IPR018392 -
Aed8g0067 382 Gene3D LysM domain 121 176 IPR036779 -
Aed8g0067 382 Pfam LysM domain 186 229 IPR018392 -
Aed8g0067 382 Pfam LysM domain 122 168 IPR018392 -
Aed8g0067 382 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 21 334 - -
Aed8g0067 382 SUPERFAMILY LysM domain 184 229 IPR036779 -
Aed8g0067 382 CDD LysM 122 167 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0067 Aed-Chr8 642817 644889 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0067 33 326 LysM Receptor-like Protein (LYPs) Gene Family AT2G17120 47.973 4.24e-83 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0067 - - gmx:100804190 535.798