Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g2435 ATGCAACCAACATCGAACGGCTCTGATTCCCAAGCGACGGAACAGCACACGCCGCCGCCGCAGCAGTGGATGCCGATGCAGTACCCGGCGGCGGCGATGGTAATGCAGCACCACATGATGCCGCCTCAACATTACGCGCCGCCGCCTCCGCCGCCCCAGCCCTACATGGCCTACCACCAGTACCAGCAGCAGCTGGCACACGTGCCGCACGCGCACCATCAGGGATCCAGCGCCGAGAACAAGACCATTTGGGTCGGCGATTTGCATCATTGGATGGACGAAAATTATCTCCACCGCTGTTTCGCTTCCACCGGCGAGATTTCGTCCATTAAGGTTATTCGCAATAAGCAGACTGGTCTATCAGAGGGGTATGGATTTGTGGAATTCTATTCACATGGAACAGCTGAGAAAGTTTTGCAGAATTATGCTGGGCTATTGATGCCTAACACAGAGCAACCTTTCCGCCTGAACTGGGCAACATTTAGCACAGGAGACAAGCGTTCAGACAATGTTCCTGATCTTTCTATTTTTGTAGGAGATTTAGCTGCAGATGTTACAGATAGCATGTTGCATGAAACTTTTTCTATTAGATACCCATCTGTTAAAGGTGCAAAAGTTGTTTTTGATGCCAATACTGGCCGTTCAAAGGGTTATGGTTTCGTCAGGTTTGGAGATGATAATGAGAGGTCCCAGGCTATGTCTGAAATGAATGGTGTTTACTGTTCTAGCAGGCCTATGCGCATTGGTGCTGCAACTCCTAGGAAAACCTCTGGCTATCAACAAGGAAGTCAGTCAAATGGCACATCCAGCCAATCTGAAACTGATTCTACAAACACAACTCAGTTTAGAGCAGATTTCGGTAATGGCTGGAGTGGGGCTTATTATGGGGGGACTGTTTATGATGGTTATGGATATGCTTTGCCACCACCTCATGACCCGACCCTTTATGCTGCTGCTTATGGGGCTTACCCTATTTATGGAGGACATCAACAGCAAGTAAGTTGA 1005 0.4905 MQPTSNGSDSQATEQHTPPPQQWMPMQYPAAAMVMQHHMMPPQHYAPPPPPPQPYMAYHQYQQQLAHVPHAHHQGSSAENKTIWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHGTAEKVLQNYAGLLMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAADVTDSMLHETFSIRYPSVKGAKVVFDANTGRSKGYGFVRFGDDNERSQAMSEMNGVYCSSRPMRIGAATPRKTSGYQQGSQSNGTSSQSETDSTNTTQFRADFGNGWSGAYYGGTVYDGYGYALPPPHDPTLYAAAYGAYPIYGGHQQQVS 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g2435 334 Gene3D - 80 160 IPR012677 -
Aed7g2435 334 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 81 161 IPR000504 GO:0003723
Aed7g2435 334 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 281 333 - -
Aed7g2435 334 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 16 282 - -
Aed7g2435 334 SUPERFAMILY RNA-binding domain, RBD 157 270 IPR035979 GO:0003676
Aed7g2435 334 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 174 253 IPR000504 GO:0003723
Aed7g2435 334 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47C-RELATED 281 333 - -
Aed7g2435 334 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47C-RELATED 16 282 - -
Aed7g2435 334 SMART rrm1_1 175 249 IPR000504 GO:0003723
Aed7g2435 334 SMART rrm1_1 82 157 IPR000504 GO:0003723
Aed7g2435 334 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 83 150 IPR000504 GO:0003723
Aed7g2435 334 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 176 245 IPR000504 GO:0003723
Aed7g2435 334 MobiDBLite consensus disorder prediction 1 24 - -
Aed7g2435 334 CDD RRM2_SECp43_like 173 252 - -
Aed7g2435 334 MobiDBLite consensus disorder prediction 1 21 - -
Aed7g2435 334 CDD RRM1_SECp43_like 82 162 - -
Aed7g2435 334 SUPERFAMILY RNA-binding domain, RBD 45 162 IPR035979 GO:0003676
Aed7g2435 334 Gene3D - 161 271 IPR012677 -
Aed7g2435 334 MobiDBLite consensus disorder prediction 251 281 - -
Aed7g2435 334 MobiDBLite consensus disorder prediction 254 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g2435 Aed-Chr7 26211805 26217318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g2435 72 251 Eukaryotic Initiation Factors Gene Family AT4G34110 27.179 1.28e-14 72.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g0181 11 1440210 1445328 Aed7g2435 7 26211805 26217318 PCT