Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1607 ATGGAAGACGAAATGTACGGCGTGGTGTCGTCCACGGCGGAGTACTCGGACAAGGCGTTGATGACGCCGGAGAACATATTTCCGGCGGAGTACCACAGCTTCCTAATGTCCTCCGCCGGGCGGATTCCGATGTACGGATCCGATGAGTTGCTCTCCGCCGCCGTCACCATCGCCGCCGCCGGCAACGAGACCGAACCCTACCCTAACGTCGTCGCCTTCGCACCGGAAATTCAGCGCCACAGCGACGCCTCTTCTCTCGTGAAAGCCAAAATCGCCTCTCATCCTCACTATCCTCGCCTCCTCCAAGCCTACATCGATTGCCAGAAGGTGGGAGCGCCTCCAGAAATCGCGTGTTTGTTAGAGGAAATCCGACGAGAAAACGACGTTTGCAAGAGAGACGTTGTTGTTTCCATTGCTGGAGATGGTGATCCTCTAGACGACCAATTACTGAGTGAAGATCGAGAGCTGAAGGATAGGCTTTTACGTAAGTTTGGAAGTCACATTGGTTCTTTGAAAATGGAATTTTCAAAGAAGAAAAAAAGGGGTAAGCTTCCCAAAGACGCAAGGCAAACACTACTTCAGTGGTGGAATATTCACTACAAATGGCCTTACCCTACGGAAGGTGATAAGATTGCACTTGCCAAATCAACTGGGTTAGACCAAAAGCAAATTAACAACTGGTTTATTAATCAGAGAAAGCGTCACTGGAAACCATCGGAGAACATGCCGTTTTCCATGGTGGATGGTCTCACCGGTCGGTTCCTTACTGATGAATGA 777 0.5032 MEDEMYGVVSSTAEYSDKALMTPENIFPAEYHSFLMSSAGRIPMYGSDELLSAAVTIAAAGNETEPYPNVVAFAPEIQRHSDASSLVKAKIASHPHYPRLLQAYIDCQKVGAPPEIACLLEEIRRENDVCKRDVVVSIAGDGDPLDDQLLSEDRELKDRLLRKFGSHIGSLKMEFSKKKKRGKLPKDARQTLLQWWNIHYKWPYPTEGDKIALAKSTGLDQKQINNWFINQRKRHWKPSENMPFSMVDGLTGRFLTDE 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1607 258 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 3 137 - -
Aed7g1607 258 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 146 248 - -
Aed7g1607 258 Pfam ELK domain 155 176 IPR005539 GO:0003677
Aed7g1607 258 ProSiteProfiles 'Homeobox' domain profile. 175 238 IPR001356 GO:0003677
Aed7g1607 258 SUPERFAMILY Homeodomain-like 176 249 IPR009057 -
Aed7g1607 258 SMART HOX_1 177 242 IPR001356 GO:0003677
Aed7g1607 258 ProSiteProfiles ELK domain profile. 155 175 IPR005539 GO:0003677
Aed7g1607 258 ProSitePatterns 'Homeobox' domain signature. 213 236 IPR017970 GO:0000981|GO:0006355
Aed7g1607 258 Gene3D - 173 244 - -
Aed7g1607 258 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 146 248 - -
Aed7g1607 258 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 3 137 - -
Aed7g1607 258 Pfam Homeobox KN domain 195 234 IPR008422 GO:0003677|GO:0006355
Aed7g1607 258 CDD homeodomain 187 239 IPR001356 GO:0003677
Aed7g1607 258 SMART KNOX1_2 85 129 IPR005540 GO:0003677|GO:0005634
Aed7g1607 258 Pfam KNOX1 domain 87 128 IPR005540 GO:0003677|GO:0005634
Aed7g1607 258 SMART ELK_2 155 176 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1607 Aed-Chr7 19212466 19220988 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Aed7g1607 KNOX1 3e-23 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed7g1607 7 19212466 19220988 Aed7g1607 7 19212466 19220988 ECH
Aed11g0433 11 3766337 3768855 Aed7g1607 7 19212466 19220988 PCT